2016-05-10 01:33:12 +08:00
<!DOCTYPE html>
<!-- [if IE 8]><html class="no - js lt - ie9" lang="en" > <![endif] -->
<!-- [if gt IE 8]><! --> < html class = "no-js" lang = "en" > <!-- <![endif] -->
< head >
< meta charset = "utf-8" >
< meta name = "viewport" content = "width=device-width, initial-scale=1.0" >
< title > compute group/group command — LAMMPS documentation< / title >
< link rel = "stylesheet" href = "_static/css/theme.css" type = "text/css" / >
< link rel = "stylesheet" href = "_static/sphinxcontrib-images/LightBox2/lightbox2/css/lightbox.css" type = "text/css" / >
2016-09-14 08:22:17 +08:00
< link rel = "top" title = "LAMMPS documentation" href = "index.html" / >
< link rel = "up" title = "Computes" href = "computes.html" / >
< link rel = "next" title = "compute gyration command" href = "compute_gyration.html" / >
< link rel = "prev" title = "compute fep command" href = "compute_fep.html" / >
2016-05-10 01:33:12 +08:00
< script src = "_static/js/modernizr.min.js" > < / script >
< / head >
< body class = "wy-body-for-nav" role = "document" >
< div class = "wy-grid-for-nav" >
< nav data-toggle = "wy-nav-shift" class = "wy-nav-side" >
< div class = "wy-side-nav-search" >
< a href = "Manual.html" class = "icon icon-home" > LAMMPS
< / a >
< div role = "search" >
< form id = "rtd-search-form" class = "wy-form" action = "search.html" method = "get" >
< input type = "text" name = "q" placeholder = "Search docs" / >
< input type = "hidden" name = "check_keywords" value = "yes" / >
< input type = "hidden" name = "area" value = "default" / >
< / form >
< / div >
< / div >
< div class = "wy-menu wy-menu-vertical" data-spy = "affix" role = "navigation" aria-label = "main navigation" >
2016-09-14 08:22:17 +08:00
< p class = "caption" > < span class = "caption-text" > User Documentation< / span > < / p >
< ul >
2016-05-10 01:33:12 +08:00
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_intro.html" > 1. Introduction< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_start.html" > 2. Getting Started< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_commands.html" > 3. Commands< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_packages.html" > 4. Packages< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_accelerate.html" > 5. Accelerating LAMMPS performance< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_howto.html" > 6. How-to discussions< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_example.html" > 7. Example problems< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_perf.html" > 8. Performance & scalability< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_tools.html" > 9. Additional tools< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_modify.html" > 10. Modifying & extending LAMMPS< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_python.html" > 11. Python interface to LAMMPS< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_errors.html" > 12. Errors< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "Section_history.html" > 13. Future and history< / a > < / li >
< / ul >
2016-09-14 08:22:17 +08:00
< p class = "caption" > < span class = "caption-text" > Index< / span > < / p >
< ul class = "current" >
< li class = "toctree-l1" > < a class = "reference internal" href = "tutorials.html" > Tutorials< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "commands.html" > Commands< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "fixes.html" > Fixes< / a > < / li >
< li class = "toctree-l1 current" > < a class = "reference internal" href = "computes.html" > Computes< / a > < ul class = "current" >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_ackland_atom.html" > compute ackland/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_angle.html" > compute angle command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_angle_local.html" > compute angle/local command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_angmom_chunk.html" > compute angmom/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_basal_atom.html" > compute basal/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_body_local.html" > compute body/local command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_bond.html" > compute bond command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_bond_local.html" > compute bond/local command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_centro_atom.html" > compute centro/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_chunk_atom.html" > compute chunk/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_cluster_atom.html" > compute cluster/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_cna_atom.html" > compute cna/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_com.html" > compute com command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_com_chunk.html" > compute com/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_contact_atom.html" > compute contact/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_coord_atom.html" > compute coord/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_damage_atom.html" > compute damage/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_dihedral.html" > compute dihedral command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_dihedral_local.html" > compute dihedral/local command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_dilatation_atom.html" > compute dilatation/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_dipole_chunk.html" > compute dipole/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_displace_atom.html" > compute displace/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_dpd.html" > compute dpd command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_dpd_atom.html" > compute dpd/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_erotate_asphere.html" > compute erotate/asphere command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_erotate_rigid.html" > compute erotate/rigid command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_erotate_sphere.html" > compute erotate/sphere command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_erotate_sphere_atom.html" > compute erotate/sphere/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_event_displace.html" > compute event/displace command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_fep.html" > compute fep command< / a > < / li >
< li class = "toctree-l2 current" > < a class = "current reference internal" href = "#" > compute group/group command< / a > < ul >
< li class = "toctree-l3" > < a class = "reference internal" href = "#syntax" > Syntax< / a > < / li >
< li class = "toctree-l3" > < a class = "reference internal" href = "#examples" > Examples< / a > < / li >
< li class = "toctree-l3" > < a class = "reference internal" href = "#description" > Description< / a > < / li >
< li class = "toctree-l3" > < a class = "reference internal" href = "#restrictions" > Restrictions< / a > < / li >
< li class = "toctree-l3" > < a class = "reference internal" href = "#default" > Default< / a > < / li >
< / ul >
< / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_gyration.html" > compute gyration command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_gyration_chunk.html" > compute gyration/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_heat_flux.html" > compute heat/flux command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_hexorder_atom.html" > compute hexorder/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_improper.html" > compute improper command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_improper_local.html" > compute improper/local command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_inertia_chunk.html" > compute inertia/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_ke.html" > compute ke command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_ke_atom.html" > compute ke/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_ke_atom_eff.html" > compute ke/atom/eff command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_ke_eff.html" > compute ke/eff command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_ke_rigid.html" > compute ke/rigid command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_meso_e_atom.html" > compute meso/e/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_meso_rho_atom.html" > compute meso/rho/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_meso_t_atom.html" > compute meso/t/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_msd.html" > compute msd command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_msd_chunk.html" > compute msd/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_msd_nongauss.html" > compute msd/nongauss command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_omega_chunk.html" > compute omega/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_orientorder_atom.html" > compute orientorder/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_pair.html" > compute pair command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_pair_local.html" > compute pair/local command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_pe.html" > compute pe command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_pe_atom.html" > compute pe/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_plasticity_atom.html" > compute plasticity/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_pressure.html" > compute pressure command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_property_atom.html" > compute property/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_property_chunk.html" > compute property/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_property_local.html" > compute property/local command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_rdf.html" > compute rdf command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_reduce.html" > compute reduce command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_reduce.html#compute-reduce-region-command" > compute reduce/region command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_rigid_local.html" > compute rigid/local command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_saed.html" > compute saed command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_slice.html" > compute slice command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_contact_radius.html" > compute smd/contact/radius command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_damage.html" > compute smd/damage command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_hourglass_error.html" > compute smd/hourglass/error command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_internal_energy.html" > compute smd/internal/energy command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_plastic_strain.html" > compute smd/plastic/strain command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_plastic_strain_rate.html" > compute smd/plastic/strain/rate command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_rho.html" > compute smd/rho command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_tlsph_defgrad.html" > compute smd/tlsph/defgrad command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_tlsph_dt.html" > compute smd/tlsph/dt command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_tlsph_num_neighs.html" > compute smd/tlsph/num/neighs command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_tlsph_shape.html" > compute smd/tlsph/shape command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_tlsph_strain.html" > compute smd/tlsph/strain command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_tlsph_strain_rate.html" > compute smd/tlsph/strain/rate command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_tlsph_stress.html" > compute smd/tlsph/stress command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_triangle_mesh_vertices.html" > compute smd/triangle/mesh/vertices< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_ulsph_num_neighs.html" > compute smd/ulsph/num/neighs command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_ulsph_strain.html" > compute smd/ulsph/strain command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_ulsph_strain_rate.html" > compute smd/ulsph/strain/rate command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_ulsph_stress.html" > compute smd/ulsph/stress command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_smd_vol.html" > compute smd/vol command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_sna_atom.html" > compute sna/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_sna_atom.html#compute-snad-atom-command" > compute snad/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_sna_atom.html#compute-snav-atom-command" > compute snav/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_stress_atom.html" > compute stress/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_tally.html" > compute force/tally command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_tally.html#compute-heat-flux-tally-command" > compute heat/flux/tally command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_tally.html#compute-pe-tally-command" > compute pe/tally command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_tally.html#compute-pe-mol-tally-command" > compute pe/mol/tally command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_tally.html#compute-stress-tally-command" > compute stress/tally command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp.html" > compute temp command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp.html#compute-temp-kk-command" > compute temp/kk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_asphere.html" > compute temp/asphere command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_body.html" > compute temp/body command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_chunk.html" > compute temp/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_com.html" > compute temp/com command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_cs.html" > compute temp/cs command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_deform.html" > compute temp/deform command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_deform_eff.html" > compute temp/deform/eff command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_drude.html" > compute temp/drude command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_eff.html" > compute temp/eff command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_partial.html" > compute temp/partial command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_profile.html" > compute temp/profile command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_ramp.html" > compute temp/ramp command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_region.html" > compute temp/region command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_region_eff.html" > compute temp/region/eff command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_rotate.html" > compute temp/rotate command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_temp_sphere.html" > compute temp/sphere command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_ti.html" > compute ti command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_torque_chunk.html" > compute torque/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_vacf.html" > compute vacf command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_vcm_chunk.html" > compute vcm/chunk command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_voronoi_atom.html" > compute voronoi/atom command< / a > < / li >
< li class = "toctree-l2" > < a class = "reference internal" href = "compute_xrd.html" > compute xrd command< / a > < / li >
< / ul >
< / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "pairs.html" > Pair Styles< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "bonds.html" > Bonds< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "angles.html" > Angle Styles< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "dihedrals.html" > Dihedral Styles< / a > < / li >
< li class = "toctree-l1" > < a class = "reference internal" href = "impropers.html" > Improper Styles< / a > < / li >
< / ul >
2016-05-10 01:33:12 +08:00
< / div >
< / nav >
< section data-toggle = "wy-nav-shift" class = "wy-nav-content-wrap" >
< nav class = "wy-nav-top" role = "navigation" aria-label = "top navigation" >
< i data-toggle = "wy-nav-top" class = "fa fa-bars" > < / i >
< a href = "Manual.html" > LAMMPS< / a >
< / nav >
< div class = "wy-nav-content" >
< div class = "rst-content" >
< div role = "navigation" aria-label = "breadcrumbs navigation" >
< ul class = "wy-breadcrumbs" >
< li > < a href = "Manual.html" > Docs< / a > » < / li >
2016-09-14 08:22:17 +08:00
< li > < a href = "computes.html" > Computes< / a > » < / li >
2016-05-10 01:33:12 +08:00
< li > compute group/group command< / li >
< li class = "wy-breadcrumbs-aside" >
< a href = "http://lammps.sandia.gov" > Website< / a >
< a href = "Section_commands.html#comm" > Commands< / a >
< / li >
< / ul >
< hr / >
2016-09-14 08:22:17 +08:00
< div class = "rst-footer-buttons" style = "margin-bottom: 1em" role = "navigation" aria-label = "footer navigation" >
< a href = "compute_gyration.html" class = "btn btn-neutral float-right" title = "compute gyration command" accesskey = "n" > Next < span class = "fa fa-arrow-circle-right" > < / span > < / a >
< a href = "compute_fep.html" class = "btn btn-neutral" title = "compute fep command" accesskey = "p" > < span class = "fa fa-arrow-circle-left" > < / span > Previous< / a >
< / div >
2016-05-10 01:33:12 +08:00
< / div >
< div role = "main" class = "document" itemscope = "itemscope" itemtype = "http://schema.org/Article" >
< div itemprop = "articleBody" >
< div class = "section" id = "compute-group-group-command" >
< span id = "index-0" > < / span > < h1 > compute group/group command< / h1 >
< div class = "section" id = "syntax" >
< h2 > Syntax< / h2 >
< div class = "highlight-default" > < div class = "highlight" > < pre > < span > < / span > < span class = "n" > compute< / span > < span class = "n" > ID< / span > < span class = "n" > group< / span > < span class = "o" > -< / span > < span class = "n" > ID< / span > < span class = "n" > group< / span > < span class = "o" > /< / span > < span class = "n" > group< / span > < span class = "n" > group2< / span > < span class = "o" > -< / span > < span class = "n" > ID< / span > < span class = "n" > keyword< / span > < span class = "n" > value< / span > < span class = "o" > ...< / span >
< / pre > < / div >
< / div >
2016-09-14 08:22:17 +08:00
< ul >
< li > < p class = "first" > ID, group-ID are documented in < a class = "reference internal" href = "compute.html" > < span class = "doc" > compute< / span > < / a > command< / p >
< / li >
< li > < p class = "first" > group/group = style name of this compute command< / p >
< / li >
< li > < p class = "first" > group2-ID = group ID of second (or same) group< / p >
< / li >
< li > < p class = "first" > zero or more keyword/value pairs may be appended< / p >
< / li >
< li > < p class = "first" > keyword = < em > pair< / em > or < em > kspace< / em > or < em > boundary< / em > < / p >
2016-05-10 01:33:12 +08:00
< pre class = "literal-block" >
< em > pair< / em > value = < em > yes< / em > or < em > no< / em >
< em > kspace< / em > value = < em > yes< / em > or < em > no< / em >
< em > boundary< / em > value = < em > yes< / em > or < em > no< / em >
< / pre >
2016-09-14 08:22:17 +08:00
< / li >
< / ul >
2016-05-10 01:33:12 +08:00
< / div >
< div class = "section" id = "examples" >
< h2 > Examples< / h2 >
< div class = "highlight-default" > < div class = "highlight" > < pre > < span > < / span > < span class = "n" > compute< / span > < span class = "mi" > 1< / span > < span class = "n" > lower< / span > < span class = "n" > group< / span > < span class = "o" > /< / span > < span class = "n" > group< / span > < span class = "n" > upper< / span >
< span class = "n" > compute< / span > < span class = "mi" > 1< / span > < span class = "n" > lower< / span > < span class = "n" > group< / span > < span class = "o" > /< / span > < span class = "n" > group< / span > < span class = "n" > upper< / span > < span class = "n" > kspace< / span > < span class = "n" > yes< / span >
< span class = "n" > compute< / span > < span class = "n" > mine< / span > < span class = "n" > fluid< / span > < span class = "n" > group< / span > < span class = "o" > /< / span > < span class = "n" > group< / span > < span class = "n" > wall< / span >
< / pre > < / div >
< / div >
< / div >
< div class = "section" id = "description" >
< h2 > Description< / h2 >
< p > Define a computation that calculates the total energy and force
interaction between two groups of atoms: the compute group and the
specified group2. The two groups can be the same.< / p >
< p > If the < em > pair< / em > keyword is set to < em > yes< / em > , which is the default, then the
the interaction energy will include a pair component which is defined
as the pairwise energy between all pairs of atoms where one atom in
the pair is in the first group and the other is in the second group.
Likewise, the interaction force calculated by this compute will
include the force on the compute group atoms due to pairwise
interactions with atoms in the specified group2.< / p >
< div class = "admonition note" >
< p class = "first admonition-title" > Note< / p >
< p class = "last" > The energies computed by the < em > pair< / em > keyword do not include tail
corrections, even if they are enabled via the
< a class = "reference internal" href = "pair_modify.html" > < span class = "doc" > pair_modify< / span > < / a > command.< / p >
< / div >
< p > If the < em > kspace< / em > keyword is set to < em > yes< / em > , which is not the default, and
if a < a class = "reference internal" href = "kspace_style.html" > < span class = "doc" > kspace_style< / span > < / a > is defined, then the interaction
energy will include a Kspace component which is the long-range
Coulombic energy between all the atoms in the first group and all the
atoms in the 2nd group. Likewise, the interaction force calculated by
this compute will include the force on the compute group atoms due to
long-range Coulombic interactions with atoms in the specified group2.< / p >
< p > Normally the long-range Coulombic energy converges only when the net
charge of the unit cell is zero. However, one can assume the net
charge of the system is neutralized by a uniform background plasma,
and a correction to the system energy can be applied to reduce
artifacts. For more information see < a class = "reference internal" href = "#bogusz" > < span class = "std std-ref" > (Bogusz)< / span > < / a > . If the
< em > boundary< / em > keyword is set to < em > yes< / em > , which is the default, and < em > kspace< / em >
contributions are included, then this energy correction term will be
added to the total group-group energy. This correction term does not
affect the force calculation and will be zero if one or both of the
groups are charge neutral. This energy correction term is the same as
that included in the regular Ewald and PPPM routines.< / p >
< p > This compute does not calculate any bond or angle or dihedral or
improper interactions between atoms in the two groups.< / p >
< hr class = "docutils" / >
< p > The pairwise contributions to the group-group interactions are
calculated by looping over a neighbor list. The Kspace contribution
to the group-group interactions require essentially the same amount of
work (FFTs, Ewald summation) as computing long-range forces for the
entire system. Thus it can be costly to invoke this compute too
frequently.< / p >
< p > If you desire a breakdown of the interactions into a pairwise and
Kspace component, simply invoke the compute twice with the appropriate
yes/no settings for the < em > pair< / em > and < em > kspace< / em > keywords. This is no more
costly than using a single compute with both keywords set to < em > yes< / em > .
The individual contributions can be summed in a
< a class = "reference internal" href = "variable.html" > < span class = "doc" > variable< / span > < / a > if desired.< / p >
< p > This < a class = "reference external" href = "PDF/kspace.pdf" > document< / a > describes how the long-range
group-group calculations are performed.< / p >
< hr class = "docutils" / >
< p > < strong > Output info:< / strong > < / p >
< p > This compute calculates a global scalar (the energy) and a global
vector of length 3 (force), which can be accessed by indices 1-3.
These values can be used by any command that uses global scalar or
vector values from a compute as input. See < a class = "reference internal" href = "Section_howto.html#howto-15" > < span class = "std std-ref" > this section< / span > < / a > for an overview of LAMMPS output
options.< / p >
< p > Both the scalar and vector values calculated by this compute are
2016-05-10 05:12:06 +08:00
“ extensive” . The scalar value will be in energy < a class = "reference internal" href = "units.html" > < span class = "doc" > units< / span > < / a > .
The vector values will be in force < a class = "reference internal" href = "units.html" > < span class = "doc" > units< / span > < / a > .< / p >
2016-05-10 01:33:12 +08:00
< / div >
< div class = "section" id = "restrictions" >
< h2 > Restrictions< / h2 >
< p > Not all pair styles can be evaluated in a pairwise mode as required by
this compute. For example, 3-body and other many-body potentials,
such as < a class = "reference internal" href = "pair_tersoff.html" > < span class = "doc" > Tersoff< / span > < / a > and
< a class = "reference internal" href = "pair_sw.html" > < span class = "doc" > Stillinger-Weber< / span > < / a > cannot be used. < a class = "reference internal" href = "pair_eam.html" > < span class = "doc" > EAM< / span > < / a >
potentials only include the pair potential portion of the EAM
interaction when used by this compute, not the embedding term.< / p >
< p > Not all Kspace styles support calculation of group/group interactions.
The < em > ewald< / em > and < em > pppm< / em > styles do.< / p >
< p > < strong > Related commands:< / strong > none< / p >
< / div >
< div class = "section" id = "default" >
< h2 > Default< / h2 >
< p > The option defaults are pair = yes, kspace = no, and boundary = yes.< / p >
< hr class = "docutils" / >
< p id = "bogusz" > Bogusz et al, J Chem Phys, 108, 7070 (1998)< / p >
< / div >
< / div >
< / div >
< / div >
< footer >
2016-09-14 08:22:17 +08:00
< div class = "rst-footer-buttons" role = "navigation" aria-label = "footer navigation" >
< a href = "compute_gyration.html" class = "btn btn-neutral float-right" title = "compute gyration command" accesskey = "n" > Next < span class = "fa fa-arrow-circle-right" > < / span > < / a >
< a href = "compute_fep.html" class = "btn btn-neutral" title = "compute fep command" accesskey = "p" > < span class = "fa fa-arrow-circle-left" > < / span > Previous< / a >
< / div >
2016-05-10 01:33:12 +08:00
< hr / >
< div role = "contentinfo" >
< p >
© Copyright 2013 Sandia Corporation.
< / p >
< / div >
Built with < a href = "http://sphinx-doc.org/" > Sphinx< / a > using a < a href = "https://github.com/snide/sphinx_rtd_theme" > theme< / a > provided by < a href = "https://readthedocs.org" > Read the Docs< / a > .
< / footer >
< / div >
< / div >
< / section >
< / div >
< script type = "text/javascript" >
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true
};
< / script >
< script type = "text/javascript" src = "_static/jquery.js" > < / script >
< script type = "text/javascript" src = "_static/underscore.js" > < / script >
< script type = "text/javascript" src = "_static/doctools.js" > < / script >
< script type = "text/javascript" src = "https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" > < / script >
< script type = "text/javascript" src = "_static/sphinxcontrib-images/LightBox2/lightbox2/js/jquery-1.11.0.min.js" > < / script >
< script type = "text/javascript" src = "_static/sphinxcontrib-images/LightBox2/lightbox2/js/lightbox.min.js" > < / script >
< script type = "text/javascript" src = "_static/sphinxcontrib-images/LightBox2/lightbox2-customize/jquery-noconflict.js" > < / script >
< script type = "text/javascript" src = "_static/js/theme.js" > < / script >
< script type = "text/javascript" >
jQuery(function () {
SphinxRtdTheme.StickyNav.enable();
});
< / script >
< / body >
< / html >
