forked from lijiext/lammps
193 lines
4.4 KiB
HTML
193 lines
4.4 KiB
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<CENTER><A HREF = "http://lammps.sandia.gov">LAMMPS WWW Site</A> - <A HREF = "Manual.html">LAMMPS Documentation</A> - <A HREF = "Section_commands.html#comm">LAMMPS Commands</A>
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</CENTER>
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<HR>
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<H1></H1>
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<CENTER><H3>LAMMPS Documentation
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</H3></CENTER>
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<CENTER>(17 July 2006 version of LAMMPS)
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</CENTER>
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<P>LAMMPS stands for Large-scale Atomic/Molecular Massively Parallel
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Simulator.
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</P>
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<P>LAMMPS is a classical molecular dynamics simulation code designed to
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run efficiently on parallel computers. It was developed at Sandia
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National Laboratories, a US Department of Energy facility, with
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funding from the DOE. It is an open-source code, distributed freely
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under the terms of the GNU Public License (GPL).
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</P>
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<P>The primary author of the code is <A HREF = "http://www.cs.sandia.gov/~sjplimp">Steve Plimpton</A>, who can be
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contacted at <A HREF = "mailto:sjplimp@sandia.gov">sjplimp@sandia.gov</A>. The <A HREF = "http://lammps.sandia.gov">LAMMPS WWW Site</A> at
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www.cs.sandia.gov/~sjplimp/lammps.html has more information about the
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code and its uses.
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</P>
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<HR>
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<P>The LAMMPS documentation is organized into the following sections. If
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you find errors or omissions in this manual or have suggestions for
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useful information to add, please send us an <A HREF = "mailto:sjplimp@sandia.gov">email</A> so we can
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improve the LAMMPS documentation.
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</P>
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<P><A HREF = "Manual.pdf">PDF file</A> of the entire manual, generated by
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<A HREF = "http://www.easysw.com/htmldoc">htmldoc</A>
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</P>
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<OL><LI><A HREF = "Section_intro.html">Introduction</A>
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<UL> 1.1 <A HREF = "Section_intro.html#1_1">What is LAMMPS</A>
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<BR>
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1.2 <A HREF = "Section_intro.html#1_2">LAMMPS features</A>
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<BR>
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1.3 <A HREF = "Section_intro.html#1_3">LAMMPS non-features</A>
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<BR>
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1.4 <A HREF = "Section_intro.html#1_4">Open source distribution</A>
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<BR>
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1.5 <A HREF = "Section_intro.html#1_5">Acknowledgments and citations</A>
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<BR></UL>
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<LI><A HREF = "Section_start.html">Getting started</A>
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<UL> 2.1 <A HREF = "Section_start.html#2_1">What's in the LAMMPS distribution</A>
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<BR>
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2.2 <A HREF = "Section_start.html#2_2">Making LAMMPS</A>
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<BR>
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2.3 <A HREF = "Section_start.html#2_3">Running LAMMPS</A>
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<BR>
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2.4 <A HREF = "Section_start.html#2_4">Command-line options</A>
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<BR>
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2.5 <A HREF = "Section_start.html#2_5">Screen output</A>
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<BR>
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2.6 <A HREF = "Section_start.html#2_6">Tips for users of previous versions</A>
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<BR></UL>
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<LI><A HREF = "Section_commands.html">Commands</A>
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<UL> 3.1 <A HREF = "Section_commands.html#3_1">LAMMPS input script</A>
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<BR>
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3.2 <A HREF = "Section_commands.html#3_2">Parsing rules</A>
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<BR>
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3.3 <A HREF = "Section_commands.html#3_3">Input script structure</A>
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<BR>
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3.4 <A HREF = "Section_commands.html#3_4">Commands listed by category</A>
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<BR>
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3.5 <A HREF = "Section_commands.html#3_5">Commands listed alphabetically</A>
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<BR></UL>
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<LI><A HREF = "Section_howto.html">How-to discussions</A>
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<UL> 4.1 <A HREF = "Section_howto.html#4_1">Restarting a simulation</A>
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<BR>
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4.2 <A HREF = "Section_howto.html#4_2">2d simulations</A>
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<BR>
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4.3 <A HREF = "Section_howto.html#4_3">CHARMM and AMBER force fields</A>
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<BR>
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4.4 <A HREF = "Section_howto.html#4_4">Running multiple simulations from one input script</A>
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<BR>
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4.5 <A HREF = "Section_howto.html#4_5">Parallel tempering</A>
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<BR>
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4.6 <A HREF = "Section_howto.html#4_6">Granular models</A>
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<BR>
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4.7 <A HREF = "Section_howto.html#4_7">TIP3P water model</A>
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<BR>
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4.8 <A HREF = "Section_howto.html#4_8">TIP4P water model</A>
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<BR>
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4.9 <A HREF = "Section_howto.html#4_9">SPC water model</A>
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<BR>
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4.9 <A HREF = "Section_howto.html#4_10">Coupling LAMMPS to other codes</A>
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<BR></UL>
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<LI><A HREF = "Section_example.html">Example problems</A>
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<LI><A HREF = "Section_perf.html">Performance & scalability</A>
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<LI><A HREF = "Section_tools.html">Additional tools</A>
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<LI><A HREF = "Section_modify.html">Modifying & Extending LAMMPS</A>
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<LI><A HREF = "Section_errors.html">Errors</A>
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<UL> 9.1 <A HREF = "Section_errors.html#9_1">Common problems</A>
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<BR>
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9.2 <A HREF = "Section_errors.html#9_2">Reporting bugs</A>
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<BR>
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9.3 <A HREF = "Section_errors.html#9_3">Error & warning messages</A>
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<BR></UL>
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<LI><A HREF = "Section_history.html">Future and history</A>
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<UL> 10.1 <A HREF = "Section_history.html#10_1">Coming attractions</A>
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<BR>
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10.2 <A HREF = "Section_history.html#10_2">Past versions</A>
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<BR></UL>
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</OL>
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</HTML>
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