forked from lijiext/lammps
76 lines
1.8 KiB
Groff
76 lines
1.8 KiB
Groff
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LAMMPS (22 Jan 2008)
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# FENE beadspring benchmark
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variable x index 1
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variable y index 1
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variable z index 1
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units lj
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atom_style bond
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atom_modify map hash
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special_bonds 0.0 1.0 1.0
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read_data data.chain
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1 = max bonds/atom
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orthogonal box = (-16.796 -16.796 -16.796) to (16.796 16.796 16.796)
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1 by 2 by 2 processor grid
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32000 atoms
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32000 velocities
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31680 bonds
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2 = max # of 1-2 neighbors
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2 = max # of special neighbors
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replicate $x $y $z
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replicate 2 $y $z
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replicate 2 2 $z
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replicate 2 2 1
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orthogonal box = (-16.796 -16.796 -16.796) to (50.388 50.388 16.796)
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2 by 2 by 1 processor grid
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128000 atoms
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126720 bonds
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2 = max # of 1-2 neighbors
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2 = max # of special neighbors
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neighbor 0.4 bin
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neigh_modify every 1 delay 1
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bond_style fene
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bond_coeff 1 30.0 1.5 1.0 1.0
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pair_style lj/cut 1.12
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pair_modify shift yes
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pair_coeff 1 1 1.0 1.0 1.12
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fix 1 all nve
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fix 2 all langevin 1.0 1.0 10.0 904297
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thermo 100
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timestep 0.012
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run 100
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Memory usage per processor = 10.0339 Mbytes
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Step Temp E_pair E_mol TotEng Press
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0 0.97027498 0.44484087 20.494523 22.394765 4.6721833
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100 0.97400897 0.44134715 20.501052 22.403401 4.6879813
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Loop time of 2.50452 on 4 procs for 100 steps with 128000 atoms
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Pair time (%) = 0.524648 (20.948)
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Bond time (%) = 0.266218 (10.6295)
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Neigh time (%) = 0.772881 (30.8594)
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Comm time (%) = 0.300915 (12.0149)
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Outpt time (%) = 0.000822663 (0.0328471)
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Other time (%) = 0.63904 (25.5154)
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Nlocal: 32000 ave 32015 max 31986 min
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Histogram: 2 0 0 0 0 0 0 0 1 1
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Nghost: 9499 ave 9524 max 9446 min
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Histogram: 1 0 0 0 0 0 0 1 0 2
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Neighs: 155798 ave 156103 max 155422 min
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Histogram: 1 0 0 0 1 0 0 0 1 1
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Total # of neighbors = 623193
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Ave neighs/atom = 4.8687
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Ave special neighs/atom = 1.98
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Neighbor list builds = 25
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Dangerous builds = 0
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