2013-06-28 07:52:42 +08:00
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/* ----------------------------------------------------------------------
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LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
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http://lammps.sandia.gov, Sandia National Laboratories
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Steve Plimpton, sjplimp@sandia.gov
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Copyright (2003) Sandia Corporation. Under the terms of Contract
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DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
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certain rights in this software. This software is distributed under
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the GNU General Public License.
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See the README file in the top-level LAMMPS directory.
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------------------------------------------------------------------------- */
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2015-10-31 04:04:06 +08:00
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#include <stdlib.h>
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#include <string.h>
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2013-06-28 07:52:42 +08:00
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#include "kspace.h"
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#include "atom.h"
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#include "comm.h"
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#include "force.h"
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#include "pair.h"
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#include "memory.h"
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#include "atom_masks.h"
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#include "error.h"
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#include "suffix.h"
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#include "domain.h"
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using namespace LAMMPS_NS;
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2014-04-10 00:51:15 +08:00
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#define SMALL 0.00001
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2013-06-28 07:52:42 +08:00
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/* ---------------------------------------------------------------------- */
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KSpace::KSpace(LAMMPS *lmp, int narg, char **arg) : Pointers(lmp)
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{
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2016-11-07 23:54:59 +08:00
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order_allocated = 0;
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2013-06-28 07:52:42 +08:00
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energy = 0.0;
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virial[0] = virial[1] = virial[2] = virial[3] = virial[4] = virial[5] = 0.0;
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triclinic_support = 1;
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ewaldflag = pppmflag = msmflag = dispersionflag = tip4pflag = dipoleflag = 0;
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compute_flag = 1;
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group_group_enable = 0;
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stagger_flag = 0;
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order = 5;
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gridflag = 0;
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gewaldflag = 0;
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minorder = 2;
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overlap_allowed = 1;
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2014-03-15 06:28:09 +08:00
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fftbench = 0;
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// default to using MPI collectives for FFT/remap only on IBM BlueGene
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#ifdef __bg__
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collective_flag = 1;
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#else
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collective_flag = 0;
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#endif
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2013-06-28 07:52:42 +08:00
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2013-10-04 06:20:29 +08:00
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kewaldflag = 0;
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2013-06-28 07:52:42 +08:00
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order_6 = 5;
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gridflag_6 = 0;
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gewaldflag_6 = 0;
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2015-02-14 06:15:04 +08:00
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auto_disp_flag = 0;
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2013-06-28 07:52:42 +08:00
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slabflag = 0;
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differentiation_flag = 0;
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slab_volfactor = 1;
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suffix_flag = Suffix::NONE;
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adjust_cutoff_flag = 1;
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2014-03-20 03:00:18 +08:00
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scalar_pressure_flag = 0;
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2015-01-20 06:14:11 +08:00
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warn_nonneutral = 1;
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2015-02-20 07:17:27 +08:00
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warn_nocharge = 1;
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2013-06-28 07:52:42 +08:00
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accuracy_absolute = -1.0;
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2014-01-21 07:54:27 +08:00
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accuracy_real_6 = -1.0;
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accuracy_kspace_6 = -1.0;
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2013-06-28 07:52:42 +08:00
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two_charge_force = force->qqr2e *
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(force->qelectron * force->qelectron) /
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(force->angstrom * force->angstrom);
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2014-01-21 07:54:27 +08:00
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neighrequest_flag = 1;
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mixflag = 0;
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splittol = 1.0e-6;
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2013-06-28 07:52:42 +08:00
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maxeatom = maxvatom = 0;
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eatom = NULL;
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vatom = NULL;
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2014-08-28 00:25:02 +08:00
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execution_space = Host;
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datamask_read = ALL_MASK;
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datamask_modify = ALL_MASK;
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2016-09-02 04:53:40 +08:00
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copymode = 0;
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2014-08-28 00:25:02 +08:00
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2013-06-28 07:52:42 +08:00
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memory->create(gcons,7,7,"kspace:gcons");
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gcons[2][0] = 15.0 / 8.0;
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gcons[2][1] = -5.0 / 4.0;
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gcons[2][2] = 3.0 / 8.0;
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gcons[3][0] = 35.0 / 16.0;
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gcons[3][1] = -35.0 / 16.0;
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gcons[3][2] = 21.0 / 16.0;
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gcons[3][3] = -5.0 / 16.0;
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gcons[4][0] = 315.0 / 128.0;
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gcons[4][1] = -105.0 / 32.0;
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gcons[4][2] = 189.0 / 64.0;
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gcons[4][3] = -45.0 / 32.0;
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gcons[4][4] = 35.0 / 128.0;
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gcons[5][0] = 693.0 / 256.0;
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gcons[5][1] = -1155.0 / 256.0;
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gcons[5][2] = 693.0 / 128.0;
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gcons[5][3] = -495.0 / 128.0;
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gcons[5][4] = 385.0 / 256.0;
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gcons[5][5] = -63.0 / 256.0;
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gcons[6][0] = 3003.0 / 1024.0;
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gcons[6][1] = -3003.0 / 512.0;
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gcons[6][2] = 9009.0 / 1024.0;
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gcons[6][3] = -2145.0 / 256.0;
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gcons[6][4] = 5005.0 / 1024.0;
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gcons[6][5] = -819.0 / 512.0;
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gcons[6][6] = 231.0 / 1024.0;
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memory->create(dgcons,7,6,"kspace:dgcons");
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dgcons[2][0] = -5.0 / 2.0;
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dgcons[2][1] = 3.0 / 2.0;
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dgcons[3][0] = -35.0 / 8.0;
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dgcons[3][1] = 21.0 / 4.0;
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dgcons[3][2] = -15.0 / 8.0;
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dgcons[4][0] = -105.0 / 16.0;
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dgcons[4][1] = 189.0 / 16.0;
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dgcons[4][2] = -135.0 / 16.0;
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dgcons[4][3] = 35.0 / 16.0;
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dgcons[5][0] = -1155.0 / 128.0;
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dgcons[5][1] = 693.0 / 32.0;
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dgcons[5][2] = -1485.0 / 64.0;
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dgcons[5][3] = 385.0 / 32.0;
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dgcons[5][4] = -315.0 / 128.0;
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dgcons[6][0] = -3003.0 / 256.0;
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dgcons[6][1] = 9009.0 / 256.0;
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dgcons[6][2] = -6435.0 / 128.0;
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dgcons[6][3] = 5005.0 / 128.0;
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dgcons[6][4] = -4095.0 / 256.0;
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dgcons[6][5] = 693.0 / 256.0;
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}
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/* ---------------------------------------------------------------------- */
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KSpace::~KSpace()
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{
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2016-09-02 04:53:40 +08:00
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if (copymode) return;
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2013-06-28 07:52:42 +08:00
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memory->destroy(eatom);
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memory->destroy(vatom);
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memory->destroy(gcons);
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memory->destroy(dgcons);
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}
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/* ---------------------------------------------------------------------- */
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void KSpace::triclinic_check()
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{
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if (domain->triclinic && triclinic_support != 1)
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error->all(FLERR,"KSpace style does not yet support triclinic geometries");
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}
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/* ---------------------------------------------------------------------- */
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void KSpace::compute_dummy(int eflag, int vflag)
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{
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if (eflag || vflag) ev_setup(eflag,vflag);
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else evflag = evflag_atom = eflag_global = vflag_global =
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eflag_atom = vflag_atom = 0;
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}
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/* ----------------------------------------------------------------------
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check that pair style is compatible with long-range solver
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------------------------------------------------------------------------- */
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void KSpace::pair_check()
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{
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if (force->pair == NULL)
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error->all(FLERR,"KSpace solver requires a pair style");
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2014-08-01 22:42:32 +08:00
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2014-07-30 22:59:20 +08:00
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if (ewaldflag && !force->pair->ewaldflag)
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error->all(FLERR,"KSpace style is incompatible with Pair style");
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if (pppmflag && !force->pair->pppmflag)
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error->all(FLERR,"KSpace style is incompatible with Pair style");
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if (msmflag && !force->pair->msmflag)
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error->all(FLERR,"KSpace style is incompatible with Pair style");
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if (dispersionflag && !force->pair->dispersionflag)
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error->all(FLERR,"KSpace style is incompatible with Pair style");
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2014-08-01 22:42:32 +08:00
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if (dipoleflag && !force->pair->dipoleflag)
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error->all(FLERR,"KSpace style is incompatible with Pair style");
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2014-07-30 22:59:20 +08:00
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if (tip4pflag && !force->pair->tip4pflag)
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error->all(FLERR,"KSpace style is incompatible with Pair style");
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2014-08-01 22:42:32 +08:00
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if (force->pair->dispersionflag && !dispersionflag)
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error->all(FLERR,"KSpace style is incompatible with Pair style");
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if (force->pair->tip4pflag && !tip4pflag)
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2014-07-30 22:59:20 +08:00
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error->all(FLERR,"KSpace style is incompatible with Pair style");
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2013-06-28 07:52:42 +08:00
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}
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/* ----------------------------------------------------------------------
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setup for energy, virial computation
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see integrate::ev_set() for values of eflag (0-3) and vflag (0-6)
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------------------------------------------------------------------------- */
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void KSpace::ev_setup(int eflag, int vflag)
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{
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int i,n;
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evflag = 1;
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eflag_either = eflag;
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eflag_global = eflag % 2;
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eflag_atom = eflag / 2;
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vflag_either = vflag;
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vflag_global = vflag % 4;
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vflag_atom = vflag / 4;
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if (eflag_atom || vflag_atom) evflag_atom = 1;
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else evflag_atom = 0;
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// reallocate per-atom arrays if necessary
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if (eflag_atom && atom->nmax > maxeatom) {
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maxeatom = atom->nmax;
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memory->destroy(eatom);
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memory->create(eatom,maxeatom,"kspace:eatom");
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}
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if (vflag_atom && atom->nmax > maxvatom) {
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maxvatom = atom->nmax;
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memory->destroy(vatom);
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memory->create(vatom,maxvatom,6,"kspace:vatom");
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}
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// zero accumulators
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if (eflag_global) energy = 0.0;
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if (vflag_global) for (i = 0; i < 6; i++) virial[i] = 0.0;
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if (eflag_atom) {
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n = atom->nlocal;
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if (tip4pflag) n += atom->nghost;
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for (i = 0; i < n; i++) eatom[i] = 0.0;
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}
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if (vflag_atom) {
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n = atom->nlocal;
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if (tip4pflag) n += atom->nghost;
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for (i = 0; i < n; i++) {
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vatom[i][0] = 0.0;
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vatom[i][1] = 0.0;
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vatom[i][2] = 0.0;
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vatom[i][3] = 0.0;
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vatom[i][4] = 0.0;
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vatom[i][5] = 0.0;
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}
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}
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}
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2014-04-10 00:51:15 +08:00
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/* ----------------------------------------------------------------------
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compute qsum,qsqsum,q2 and give error/warning if not charge neutral
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2015-01-20 06:14:11 +08:00
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called initially, when particle count changes, when charges are changed
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2014-04-10 00:51:15 +08:00
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------------------------------------------------------------------------- */
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2015-01-20 06:14:11 +08:00
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void KSpace::qsum_qsq()
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2014-04-10 00:51:15 +08:00
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{
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2014-10-21 05:17:46 +08:00
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const double * const q = atom->q;
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const int nlocal = atom->nlocal;
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double qsum_local(0.0), qsqsum_local(0.0);
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#if defined(_OPENMP)
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#pragma omp parallel for default(none) reduction(+:qsum_local,qsqsum_local)
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#endif
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for (int i = 0; i < nlocal; i++) {
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qsum_local += q[i];
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qsqsum_local += q[i]*q[i];
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2014-04-10 00:51:15 +08:00
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}
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2014-10-21 05:17:46 +08:00
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MPI_Allreduce(&qsum_local,&qsum,1,MPI_DOUBLE,MPI_SUM,world);
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MPI_Allreduce(&qsqsum_local,&qsqsum,1,MPI_DOUBLE,MPI_SUM,world);
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2014-04-10 00:51:15 +08:00
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2015-02-20 07:17:27 +08:00
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if ((qsqsum == 0.0) && (comm->me == 0) && warn_nocharge) {
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error->warning(FLERR,"Using kspace solver on system with no charge");
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warn_nocharge = 0;
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}
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2014-04-10 00:51:15 +08:00
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q2 = qsqsum * force->qqrd2e;
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// not yet sure of the correction needed for non-neutral systems
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2015-01-20 06:14:11 +08:00
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// so issue warning or error
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2014-04-10 00:51:15 +08:00
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if (fabs(qsum) > SMALL) {
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char str[128];
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sprintf(str,"System is not charge neutral, net charge = %g",qsum);
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2015-01-20 06:14:11 +08:00
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if (!warn_nonneutral) error->all(FLERR,str);
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if (warn_nonneutral == 1 && comm->me == 0) error->warning(FLERR,str);
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warn_nonneutral = 2;
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2014-04-10 00:51:15 +08:00
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}
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}
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2013-06-28 07:52:42 +08:00
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/* ----------------------------------------------------------------------
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estimate the accuracy of the short-range coulomb tables
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------------------------------------------------------------------------- */
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double KSpace::estimate_table_accuracy(double q2_over_sqrt, double spr)
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{
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double table_accuracy = 0.0;
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int nctb = force->pair->ncoultablebits;
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2016-04-27 02:32:11 +08:00
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if (comm->me == 0) {
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char str[128];
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if (nctb)
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sprintf(str,"Using %d-bit tables for long-range coulomb",nctb);
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else
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sprintf(str,"Using polynomial approximation for long-range coulomb");
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error->warning(FLERR,str);
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}
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2013-06-28 07:52:42 +08:00
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if (nctb) {
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double empirical_precision[17];
|
|
|
|
empirical_precision[6] = 6.99E-03;
|
|
|
|
empirical_precision[7] = 1.78E-03;
|
|
|
|
empirical_precision[8] = 4.72E-04;
|
|
|
|
empirical_precision[9] = 1.17E-04;
|
|
|
|
empirical_precision[10] = 2.95E-05;
|
|
|
|
empirical_precision[11] = 7.41E-06;
|
|
|
|
empirical_precision[12] = 1.76E-06;
|
|
|
|
empirical_precision[13] = 9.28E-07;
|
|
|
|
empirical_precision[14] = 7.46E-07;
|
|
|
|
empirical_precision[15] = 7.32E-07;
|
|
|
|
empirical_precision[16] = 7.30E-07;
|
|
|
|
if (nctb <= 6) table_accuracy = empirical_precision[6];
|
|
|
|
else if (nctb <= 16) table_accuracy = empirical_precision[nctb];
|
|
|
|
else table_accuracy = empirical_precision[16];
|
|
|
|
table_accuracy *= q2_over_sqrt;
|
|
|
|
if ((table_accuracy > spr) && (comm->me == 0))
|
|
|
|
error->warning(FLERR,"For better accuracy use 'pair_modify table 0'");
|
|
|
|
}
|
|
|
|
|
|
|
|
return table_accuracy;
|
|
|
|
}
|
|
|
|
|
|
|
|
/* ----------------------------------------------------------------------
|
|
|
|
convert box coords vector to transposed triclinic lamda (0-1) coords
|
|
|
|
vector, lamda = [(H^-1)^T] * v, does not preserve vector magnitude
|
|
|
|
v and lamda can point to same 3-vector
|
|
|
|
------------------------------------------------------------------------- */
|
|
|
|
|
|
|
|
void KSpace::x2lamdaT(double *v, double *lamda)
|
|
|
|
{
|
|
|
|
double *h_inv = domain->h_inv;
|
|
|
|
double lamda_tmp[3];
|
|
|
|
|
|
|
|
lamda_tmp[0] = h_inv[0]*v[0];
|
|
|
|
lamda_tmp[1] = h_inv[5]*v[0] + h_inv[1]*v[1];
|
|
|
|
lamda_tmp[2] = h_inv[4]*v[0] + h_inv[3]*v[1] + h_inv[2]*v[2];
|
|
|
|
|
|
|
|
lamda[0] = lamda_tmp[0];
|
|
|
|
lamda[1] = lamda_tmp[1];
|
|
|
|
lamda[2] = lamda_tmp[2];
|
|
|
|
}
|
|
|
|
|
|
|
|
/* ----------------------------------------------------------------------
|
|
|
|
convert lamda (0-1) coords vector to transposed box coords vector
|
|
|
|
lamda = (H^T) * v, does not preserve vector magnitude
|
|
|
|
v and lamda can point to same 3-vector
|
|
|
|
------------------------------------------------------------------------- */
|
|
|
|
|
|
|
|
void KSpace::lamda2xT(double *lamda, double *v)
|
|
|
|
{
|
2014-11-19 23:56:24 +08:00
|
|
|
double h[6];
|
2014-09-24 06:29:05 +08:00
|
|
|
h[0] = domain->h[0];
|
|
|
|
h[1] = domain->h[1];
|
|
|
|
h[2] = domain->h[2];
|
|
|
|
h[3] = fabs(domain->h[3]);
|
|
|
|
h[4] = fabs(domain->h[4]);
|
|
|
|
h[5] = fabs(domain->h[5]);
|
2013-06-28 07:52:42 +08:00
|
|
|
double v_tmp[3];
|
|
|
|
|
|
|
|
v_tmp[0] = h[0]*lamda[0];
|
|
|
|
v_tmp[1] = h[5]*lamda[0] + h[1]*lamda[1];
|
|
|
|
v_tmp[2] = h[4]*lamda[0] + h[3]*lamda[1] + h[2]*lamda[2];
|
|
|
|
|
|
|
|
v[0] = v_tmp[0];
|
|
|
|
v[1] = v_tmp[1];
|
|
|
|
v[2] = v_tmp[2];
|
|
|
|
}
|
|
|
|
|
|
|
|
/* ----------------------------------------------------------------------
|
|
|
|
convert triclinic lamda (0-1) coords vector to box coords vector
|
|
|
|
v = H * lamda, does not preserve vector magnitude
|
|
|
|
lamda and v can point to same 3-vector
|
|
|
|
------------------------------------------------------------------------- */
|
|
|
|
|
|
|
|
void KSpace::lamda2xvector(double *lamda, double *v)
|
|
|
|
{
|
|
|
|
double *h = domain->h;
|
|
|
|
|
|
|
|
v[0] = h[0]*lamda[0] + h[5]*lamda[1] + h[4]*lamda[2];
|
|
|
|
v[1] = h[1]*lamda[1] + h[3]*lamda[2];
|
|
|
|
v[2] = h[2]*lamda[2];
|
|
|
|
}
|
|
|
|
|
|
|
|
/* ----------------------------------------------------------------------
|
|
|
|
convert a sphere in box coords to an ellipsoid in lamda (0-1)
|
2015-10-31 04:04:06 +08:00
|
|
|
coords and return the tight (axis-aligned) bounding box, does not
|
2013-06-28 07:52:42 +08:00
|
|
|
preserve vector magnitude
|
|
|
|
see http://www.loria.fr/~shornus/ellipsoid-bbox.html and
|
2014-04-10 00:51:15 +08:00
|
|
|
http://yiningkarlli.blogspot.com/2013/02/
|
|
|
|
bounding-boxes-for-ellipsoidsfigure.html
|
2013-06-28 07:52:42 +08:00
|
|
|
------------------------------------------------------------------------- */
|
|
|
|
|
|
|
|
void KSpace::kspacebbox(double r, double *b)
|
|
|
|
{
|
|
|
|
double *h = domain->h;
|
|
|
|
double lx,ly,lz,xy,xz,yz;
|
|
|
|
lx = h[0];
|
|
|
|
ly = h[1];
|
|
|
|
lz = h[2];
|
|
|
|
yz = h[3];
|
|
|
|
xz = h[4];
|
|
|
|
xy = h[5];
|
|
|
|
|
2015-10-31 04:04:06 +08:00
|
|
|
b[0] = r*sqrt(ly*ly*lz*lz + ly*ly*xz*xz - 2.0*ly*xy*xz*yz + lz*lz*xy*xy +
|
2013-06-28 07:52:42 +08:00
|
|
|
xy*xy*yz*yz)/(lx*ly*lz);
|
|
|
|
b[1] = r*sqrt(lz*lz + yz*yz)/(ly*lz);
|
|
|
|
b[2] = r/lz;
|
|
|
|
}
|
|
|
|
|
|
|
|
/* ----------------------------------------------------------------------
|
|
|
|
modify parameters of the KSpace style
|
|
|
|
------------------------------------------------------------------------- */
|
|
|
|
|
|
|
|
void KSpace::modify_params(int narg, char **arg)
|
|
|
|
{
|
|
|
|
int iarg = 0;
|
|
|
|
while (iarg < narg) {
|
|
|
|
if (strcmp(arg[iarg],"mesh") == 0) {
|
|
|
|
if (iarg+4 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
2014-03-15 06:28:09 +08:00
|
|
|
nx_pppm = nx_msm_max = force->inumeric(FLERR,arg[iarg+1]);
|
|
|
|
ny_pppm = ny_msm_max = force->inumeric(FLERR,arg[iarg+2]);
|
|
|
|
nz_pppm = nz_msm_max = force->inumeric(FLERR,arg[iarg+3]);
|
2013-06-28 07:52:42 +08:00
|
|
|
if (nx_pppm == 0 && ny_pppm == 0 && nz_pppm == 0) gridflag = 0;
|
|
|
|
else gridflag = 1;
|
|
|
|
iarg += 4;
|
|
|
|
} else if (strcmp(arg[iarg],"mesh/disp") == 0) {
|
|
|
|
if (iarg+4 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
2014-03-15 06:28:09 +08:00
|
|
|
nx_pppm_6 = force->inumeric(FLERR,arg[iarg+1]);
|
|
|
|
ny_pppm_6 = force->inumeric(FLERR,arg[iarg+2]);
|
|
|
|
nz_pppm_6 = force->inumeric(FLERR,arg[iarg+3]);
|
2013-06-28 07:52:42 +08:00
|
|
|
if (nx_pppm_6 == 0 || ny_pppm_6 == 0 || nz_pppm_6 == 0) gridflag_6 = 0;
|
|
|
|
else gridflag_6 = 1;
|
|
|
|
iarg += 4;
|
|
|
|
} else if (strcmp(arg[iarg],"order") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
2014-03-15 06:28:09 +08:00
|
|
|
order = force->inumeric(FLERR,arg[iarg+1]);
|
2013-06-28 07:52:42 +08:00
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"order/disp") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
2014-03-15 06:28:09 +08:00
|
|
|
order_6 = force->inumeric(FLERR,arg[iarg+1]);
|
2013-06-28 07:52:42 +08:00
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"minorder") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
2014-03-15 06:28:09 +08:00
|
|
|
minorder = force->inumeric(FLERR,arg[iarg+1]);
|
2013-06-28 07:52:42 +08:00
|
|
|
if (minorder < 2) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"overlap") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"yes") == 0) overlap_allowed = 1;
|
|
|
|
else if (strcmp(arg[iarg+1],"no") == 0) overlap_allowed = 0;
|
|
|
|
else error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"force") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
2014-03-15 06:28:09 +08:00
|
|
|
accuracy_absolute = force->numeric(FLERR,arg[iarg+1]);
|
2013-06-28 07:52:42 +08:00
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"gewald") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
2014-03-15 06:28:09 +08:00
|
|
|
g_ewald = force->numeric(FLERR,arg[iarg+1]);
|
2013-06-28 07:52:42 +08:00
|
|
|
if (g_ewald == 0.0) gewaldflag = 0;
|
|
|
|
else gewaldflag = 1;
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"gewald/disp") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
2014-03-15 06:28:09 +08:00
|
|
|
g_ewald_6 = force->numeric(FLERR,arg[iarg+1]);
|
2013-06-28 07:52:42 +08:00
|
|
|
if (g_ewald_6 == 0.0) gewaldflag_6 = 0;
|
|
|
|
else gewaldflag_6 = 1;
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"slab") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"nozforce") == 0) {
|
|
|
|
slabflag = 2;
|
|
|
|
} else {
|
|
|
|
slabflag = 1;
|
2014-03-15 06:28:09 +08:00
|
|
|
slab_volfactor = force->numeric(FLERR,arg[iarg+1]);
|
2013-06-28 07:52:42 +08:00
|
|
|
if (slab_volfactor <= 1.0)
|
|
|
|
error->all(FLERR,"Bad kspace_modify slab parameter");
|
|
|
|
if (slab_volfactor < 2.0 && comm->me == 0)
|
|
|
|
error->warning(FLERR,"Kspace_modify slab param < 2.0 may "
|
|
|
|
"cause unphysical behavior");
|
|
|
|
}
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"compute") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"yes") == 0) compute_flag = 1;
|
|
|
|
else if (strcmp(arg[iarg+1],"no") == 0) compute_flag = 0;
|
|
|
|
else error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"fftbench") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"yes") == 0) fftbench = 1;
|
|
|
|
else if (strcmp(arg[iarg+1],"no") == 0) fftbench = 0;
|
|
|
|
else error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
2014-03-15 06:28:09 +08:00
|
|
|
} else if (strcmp(arg[iarg],"collective") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"yes") == 0) collective_flag = 1;
|
|
|
|
else if (strcmp(arg[iarg+1],"no") == 0) collective_flag = 0;
|
|
|
|
else error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
2013-06-28 07:52:42 +08:00
|
|
|
} else if (strcmp(arg[iarg],"diff") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"ad") == 0) differentiation_flag = 1;
|
|
|
|
else if (strcmp(arg[iarg+1],"ik") == 0) differentiation_flag = 0;
|
|
|
|
else error->all(FLERR, "Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"cutoff/adjust") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"yes") == 0) adjust_cutoff_flag = 1;
|
|
|
|
else if (strcmp(arg[iarg+1],"no") == 0) adjust_cutoff_flag = 0;
|
|
|
|
else error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
2013-10-04 06:20:29 +08:00
|
|
|
} else if (strcmp(arg[iarg],"kmax/ewald") == 0) {
|
|
|
|
if (iarg+4 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
kx_ewald = atoi(arg[iarg+1]);
|
|
|
|
ky_ewald = atoi(arg[iarg+2]);
|
|
|
|
kz_ewald = atoi(arg[iarg+3]);
|
|
|
|
if (kx_ewald < 0 || ky_ewald < 0 || kz_ewald < 0)
|
|
|
|
error->all(FLERR,"Bad kspace_modify kmax/ewald parameter");
|
|
|
|
if (kx_ewald > 0 && ky_ewald > 0 && kz_ewald > 0)
|
|
|
|
kewaldflag = 1;
|
|
|
|
else
|
|
|
|
kewaldflag = 0;
|
|
|
|
iarg += 4;
|
2014-01-21 07:54:27 +08:00
|
|
|
} else if (strcmp(arg[iarg],"mix/disp") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"pair") == 0) mixflag = 0;
|
|
|
|
else if (strcmp(arg[iarg+1],"geom") == 0) mixflag = 1;
|
|
|
|
else if (strcmp(arg[iarg+1],"none") == 0) mixflag = 2;
|
|
|
|
else error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"force/disp/real") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
accuracy_real_6 = atof(arg[iarg+1]);
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"force/disp/kspace") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
accuracy_kspace_6 = atof(arg[iarg+1]);
|
|
|
|
iarg += 2;
|
|
|
|
} else if (strcmp(arg[iarg],"eigtol") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
splittol = atof(arg[iarg+1]);
|
2015-10-31 04:04:06 +08:00
|
|
|
if (splittol >= 1.0)
|
2014-01-30 02:59:46 +08:00
|
|
|
error->all(FLERR,"Kspace_modify eigtol must be smaller than one");
|
2014-01-21 07:54:27 +08:00
|
|
|
iarg += 2;
|
2014-03-20 03:00:18 +08:00
|
|
|
} else if (strcmp(arg[iarg],"pressure/scalar") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"yes") == 0) scalar_pressure_flag = 1;
|
|
|
|
else if (strcmp(arg[iarg+1],"no") == 0) scalar_pressure_flag = 0;
|
|
|
|
else error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
2015-02-14 06:15:04 +08:00
|
|
|
} else if (strcmp(arg[iarg],"disp/auto") == 0) {
|
|
|
|
if (iarg+2 > narg) error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
if (strcmp(arg[iarg+1],"yes") == 0) auto_disp_flag = 1;
|
|
|
|
else if (strcmp(arg[iarg+1],"no") == 0) auto_disp_flag = 0;
|
|
|
|
else error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
iarg += 2;
|
2013-06-28 07:52:42 +08:00
|
|
|
} else error->all(FLERR,"Illegal kspace_modify command");
|
|
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
/* ---------------------------------------------------------------------- */
|
|
|
|
|
|
|
|
void *KSpace::extract(const char *str)
|
|
|
|
{
|
|
|
|
if (strcmp(str,"scale") == 0) return (void *) &scale;
|
|
|
|
return NULL;
|
|
|
|
}
|