2016-05-12 21:58:19 +08:00
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#HTMLDOC 1.8.27
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-t pdf14 -f "../Manual.pdf" --book --toclevels 4 --no-numbered --toctitle "Table of Contents" --title --textcolor #000000 --linkcolor #0000ff --linkstyle plain --bodycolor #ffffff --size Universal --left 1.00in --right 0.50in --top 0.50in --bottom 0.50in --header .t. --header1 ... --footer ..1 --nup 1 --tocheader .t. --tocfooter ..i --portrait --color --no-pscommands --no-xrxcomments --compression=1 --jpeg=0 --fontsize 11.0 --fontspacing 1.2 --headingfont helvetica --bodyfont times --headfootsize 11.0 --headfootfont helvetica --charset iso-8859-1 --links --embedfonts --pagemode document --pagelayout single --firstpage c1 --pageeffect none --pageduration 10 --effectduration 1.0 --no-encryption --permissions all --owner-password "" --user-password "" --browserwidth 680 --no-strict --no-overflow
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Manual.html
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Section_intro.html
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Section_start.html
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Section_commands.html
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Section_packages.html
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Section_accelerate.html
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accelerate_gpu.html
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accelerate_intel.html
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accelerate_kokkos.html
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accelerate_omp.html
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accelerate_opt.html
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Section_howto.html
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Section_example.html
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Section_perf.html
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Section_tools.html
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Section_modify.html
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Section_python.html
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Section_errors.html
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Section_history.html
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2016-07-31 00:08:42 +08:00
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tutorial_drude.html
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tutorial_github.html
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body.html
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manifolds.html
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angle_coeff.html
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angle_style.html
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atom_modify.html
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atom_style.html
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balance.html
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bond_coeff.html
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bond_style.html
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bond_write.html
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boundary.html
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box.html
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change_box.html
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clear.html
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comm_modify.html
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2016-07-31 00:08:42 +08:00
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comm_style.html
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compute.html
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compute_modify.html
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2016-05-12 21:58:19 +08:00
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create_atoms.html
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create_bonds.html
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create_box.html
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delete_atoms.html
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delete_bonds.html
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dielectric.html
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dihedral_coeff.html
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dihedral_style.html
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dimension.html
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displace_atoms.html
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dump.html
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dump_custom_vtk.html
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dump_h5md.html
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dump_image.html
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dump_modify.html
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dump_molfile.html
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echo.html
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fix.html
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fix_modify.html
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group.html
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group2ndx.html
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if.html
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improper_coeff.html
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improper_style.html
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include.html
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info.html
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jump.html
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kspace_modify.html
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kspace_style.html
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label.html
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lattice.html
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log.html
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mass.html
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min_modify.html
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min_style.html
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minimize.html
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molecule.html
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neb.html
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neigh_modify.html
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neighbor.html
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newton.html
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next.html
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package.html
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pair_coeff.html
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pair_modify.html
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pair_style.html
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pair_write.html
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partition.html
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prd.html
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print.html
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processors.html
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python.html
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quit.html
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read_data.html
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read_dump.html
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read_restart.html
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region.html
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replicate.html
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rerun.html
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reset_timestep.html
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restart.html
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run.html
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run_style.html
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set.html
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shell.html
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special_bonds.html
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suffix.html
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tad.html
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temper.html
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thermo.html
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thermo_modify.html
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thermo_style.html
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timer.html
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timestep.html
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uncompute.html
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undump.html
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unfix.html
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units.html
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variable.html
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velocity.html
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write_coeff.html
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write_data.html
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2016-05-12 21:58:19 +08:00
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write_dump.html
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2016-07-31 00:08:42 +08:00
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write_restart.html
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2016-05-12 21:58:19 +08:00
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fix_adapt.html
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fix_adapt_fep.html
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fix_addforce.html
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fix_addtorque.html
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fix_append_atoms.html
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fix_atc.html
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fix_atom_swap.html
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fix_ave_atom.html
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fix_ave_chunk.html
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fix_ave_correlate.html
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fix_ave_correlate_long.html
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fix_ave_histo.html
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fix_ave_time.html
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fix_aveforce.html
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fix_balance.html
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fix_bond_break.html
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fix_bond_create.html
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fix_bond_swap.html
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fix_box_relax.html
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fix_colvars.html
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fix_deform.html
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fix_deposit.html
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fix_drag.html
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fix_drude.html
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fix_drude_transform.html
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fix_dt_reset.html
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fix_efield.html
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fix_ehex.html
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fix_enforce2d.html
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fix_eos_cv.html
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fix_eos_table.html
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fix_eos_table_rx.html
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fix_evaporate.html
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fix_external.html
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fix_freeze.html
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fix_gcmc.html
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fix_gld.html
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fix_gle.html
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fix_gravity.html
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fix_heat.html
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fix_imd.html
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fix_indent.html
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fix_ipi.html
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fix_langevin.html
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fix_langevin_drude.html
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fix_langevin_eff.html
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fix_lb_fluid.html
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fix_lb_momentum.html
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fix_lb_pc.html
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fix_lb_rigid_pc_sphere.html
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fix_lb_viscous.html
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fix_lineforce.html
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fix_manifoldforce.html
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fix_meso.html
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fix_meso_stationary.html
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fix_momentum.html
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fix_move.html
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fix_msst.html
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fix_neb.html
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fix_nh.html
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fix_nh_eff.html
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fix_nph_asphere.html
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fix_nph_body.html
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fix_nph_sphere.html
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fix_nphug.html
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fix_npt_asphere.html
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fix_npt_body.html
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fix_npt_sphere.html
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fix_nve.html
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fix_nve_asphere.html
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fix_nve_asphere_noforce.html
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fix_nve_body.html
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fix_nve_eff.html
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fix_nve_limit.html
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fix_nve_line.html
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fix_nve_manifold_rattle.html
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fix_nve_noforce.html
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fix_nve_sphere.html
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fix_nve_tri.html
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fix_nvt_asphere.html
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fix_nvt_body.html
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fix_nvt_manifold_rattle.html
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fix_nvt_sllod.html
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fix_nvt_sllod_eff.html
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fix_nvt_sphere.html
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fix_oneway.html
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fix_orient.html
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fix_phonon.html
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fix_pimd.html
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fix_planeforce.html
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fix_poems.html
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fix_pour.html
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fix_press_berendsen.html
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fix_print.html
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fix_property_atom.html
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fix_qbmsst.html
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fix_qeq.html
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fix_qeq_comb.html
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fix_qeq_reax.html
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fix_qmmm.html
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fix_qtb.html
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fix_reax_bonds.html
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fix_reaxc_species.html
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fix_recenter.html
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fix_restrain.html
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fix_rigid.html
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fix_rx.html
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fix_saed_vtk.html
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2016-05-12 21:58:19 +08:00
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fix_setforce.html
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fix_shake.html
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fix_shardlow.html
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fix_smd.html
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fix_smd_adjust_dt.html
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fix_smd_integrate_tlsph.html
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fix_smd_integrate_ulsph.html
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fix_smd_move_triangulated_surface.html
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fix_smd_setvel.html
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fix_smd_tlsph_reference_configuration.html
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fix_smd_wall_surface.html
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fix_spring.html
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fix_spring_chunk.html
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fix_spring_rg.html
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fix_spring_self.html
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fix_srd.html
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fix_store_force.html
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fix_store_state.html
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fix_temp_berendsen.html
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fix_temp_csvr.html
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fix_temp_rescale.html
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fix_temp_rescale_eff.html
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fix_tfmc.html
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fix_thermal_conductivity.html
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fix_ti_rs.html
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fix_ti_spring.html
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fix_tmd.html
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fix_ttm.html
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fix_tune_kspace.html
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2016-05-12 21:58:19 +08:00
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fix_vector.html
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fix_viscosity.html
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fix_viscous.html
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fix_wall.html
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fix_wall_gran.html
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2016-05-12 21:58:19 +08:00
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fix_wall_piston.html
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fix_wall_reflect.html
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fix_wall_region.html
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fix_wall_srd.html
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2016-07-31 00:08:42 +08:00
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compute_ackland_atom.html
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2016-05-12 21:58:19 +08:00
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compute_angle.html
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compute_angle_local.html
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compute_angmom_chunk.html
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compute_basal_atom.html
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2016-07-31 00:08:42 +08:00
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compute_body_local.html
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compute_bond.html
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2016-05-12 21:58:19 +08:00
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compute_bond_local.html
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compute_centro_atom.html
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2016-07-31 00:08:42 +08:00
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compute_chunk_atom.html
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2016-05-12 21:58:19 +08:00
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compute_cluster_atom.html
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compute_cna_atom.html
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2016-07-31 00:08:42 +08:00
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compute_com.html
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compute_com_chunk.html
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2016-05-12 21:58:19 +08:00
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compute_contact_atom.html
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compute_coord_atom.html
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compute_damage_atom.html
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2016-07-31 00:08:42 +08:00
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compute_dihedral.html
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compute_dihedral_local.html
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2016-05-12 21:58:19 +08:00
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compute_dilatation_atom.html
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2016-07-31 00:08:42 +08:00
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compute_dipole_chunk.html
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2016-05-12 21:58:19 +08:00
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compute_displace_atom.html
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2016-07-31 00:08:42 +08:00
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compute_dpd.html
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2016-05-12 21:58:19 +08:00
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compute_dpd_atom.html
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2016-07-31 00:08:42 +08:00
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compute_erotate_asphere.html
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compute_erotate_rigid.html
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compute_erotate_sphere.html
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2016-05-12 21:58:19 +08:00
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compute_erotate_sphere_atom.html
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2016-07-31 00:08:42 +08:00
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compute_event_displace.html
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compute_fep.html
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compute_group_group.html
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compute_gyration.html
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compute_gyration_chunk.html
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compute_heat_flux.html
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2016-05-12 21:58:19 +08:00
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compute_hexorder_atom.html
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2016-07-31 00:08:42 +08:00
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compute_improper.html
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compute_improper_local.html
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compute_inertia_chunk.html
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compute_ke.html
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2016-05-12 21:58:19 +08:00
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compute_ke_atom.html
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compute_ke_atom_eff.html
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2016-07-31 00:08:42 +08:00
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compute_ke_eff.html
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2016-05-12 21:58:19 +08:00
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compute_ke_rigid.html
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compute_meso_e_atom.html
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compute_meso_rho_atom.html
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compute_meso_t_atom.html
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2016-07-31 00:08:42 +08:00
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compute_msd.html
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compute_msd_chunk.html
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compute_msd_nongauss.html
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compute_omega_chunk.html
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2016-05-12 21:58:19 +08:00
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compute_orientorder_atom.html
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2016-07-31 00:08:42 +08:00
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compute_pair.html
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compute_pair_local.html
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compute_pe.html
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2016-05-12 21:58:19 +08:00
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compute_pe_atom.html
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compute_plasticity_atom.html
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2016-07-31 00:08:42 +08:00
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compute_pressure.html
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compute_property_atom.html
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compute_property_chunk.html
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compute_property_local.html
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compute_rdf.html
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compute_reduce.html
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compute_rigid_local.html
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compute_saed.html
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compute_slice.html
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2016-05-12 21:58:19 +08:00
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compute_smd_contact_radius.html
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compute_smd_damage.html
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compute_smd_hourglass_error.html
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compute_smd_internal_energy.html
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compute_smd_plastic_strain.html
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2016-07-31 00:08:42 +08:00
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compute_smd_plastic_strain_rate.html
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2016-05-12 21:58:19 +08:00
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compute_smd_rho.html
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compute_smd_tlsph_defgrad.html
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compute_smd_tlsph_dt.html
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compute_smd_tlsph_num_neighs.html
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compute_smd_tlsph_shape.html
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compute_smd_tlsph_strain.html
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2016-07-31 00:08:42 +08:00
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compute_smd_tlsph_strain_rate.html
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2016-05-12 21:58:19 +08:00
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compute_smd_tlsph_stress.html
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compute_smd_triangle_mesh_vertices.html
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compute_smd_ulsph_num_neighs.html
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compute_smd_ulsph_strain.html
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2016-07-31 00:08:42 +08:00
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compute_smd_ulsph_strain_rate.html
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2016-05-12 21:58:19 +08:00
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compute_smd_ulsph_stress.html
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compute_smd_vol.html
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2016-07-31 00:08:42 +08:00
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compute_sna_atom.html
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compute_stress_atom.html
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2016-05-12 21:58:19 +08:00
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compute_tally.html
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compute_temp.html
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compute_temp_asphere.html
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compute_temp_body.html
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2016-07-31 00:08:42 +08:00
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compute_temp_chunk.html
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2016-05-12 21:58:19 +08:00
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compute_temp_com.html
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compute_temp_cs.html
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compute_temp_deform.html
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2016-07-31 00:08:42 +08:00
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compute_temp_deform_eff.html
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2016-05-12 21:58:19 +08:00
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compute_temp_drude.html
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2016-07-31 00:08:42 +08:00
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compute_temp_eff.html
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2016-05-12 21:58:19 +08:00
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compute_temp_partial.html
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compute_temp_profile.html
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compute_temp_ramp.html
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compute_temp_region.html
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2016-07-31 00:08:42 +08:00
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compute_temp_region_eff.html
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2016-05-12 21:58:19 +08:00
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compute_temp_rotate.html
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compute_temp_sphere.html
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compute_ti.html
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2016-07-31 00:08:42 +08:00
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compute_torque_chunk.html
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2016-05-12 21:58:19 +08:00
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compute_vacf.html
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2016-07-31 00:08:42 +08:00
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compute_vcm_chunk.html
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compute_voronoi_atom.html
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compute_xrd.html
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2016-05-12 21:58:19 +08:00
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pair_adp.html
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pair_airebo.html
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pair_awpmd.html
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pair_beck.html
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pair_body.html
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pair_bop.html
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pair_born.html
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pair_brownian.html
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pair_buck.html
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pair_buck_long.html
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pair_charmm.html
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pair_class2.html
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pair_colloid.html
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pair_comb.html
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pair_coul.html
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pair_coul_diel.html
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pair_cs.html
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pair_dipole.html
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pair_dpd.html
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pair_dpd_fdt.html
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pair_dsmc.html
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pair_eam.html
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pair_edip.html
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pair_eff.html
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pair_eim.html
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2016-07-31 00:08:42 +08:00
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pair_exp6_rx.html
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2016-05-12 21:58:19 +08:00
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pair_gauss.html
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pair_gayberne.html
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pair_gran.html
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pair_gromacs.html
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pair_hbond_dreiding.html
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pair_hybrid.html
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pair_kim.html
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pair_lcbop.html
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2016-07-31 00:08:42 +08:00
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pair_line_lj.html
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2016-05-12 21:58:19 +08:00
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pair_list.html
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pair_lj.html
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pair_lj96.html
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pair_lj_cubic.html
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pair_lj_expand.html
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pair_lj_long.html
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pair_lj_sf.html
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pair_lj_smooth.html
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pair_lj_smooth_linear.html
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pair_lj_soft.html
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pair_lubricate.html
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pair_lubricateU.html
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pair_mdf.html
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pair_meam.html
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pair_meam_spline.html
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pair_meam_sw_spline.html
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pair_mgpt.html
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pair_mie.html
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pair_morse.html
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2016-05-12 22:14:39 +08:00
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pair_multi_lucy.html
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2016-07-31 00:08:42 +08:00
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pair_multi_lucy_rx.html
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pair_nb3b_harmonic.html
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2016-05-12 21:58:19 +08:00
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pair_nm.html
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2016-07-31 00:08:42 +08:00
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pair_none.html
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2016-05-12 21:58:19 +08:00
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pair_peri.html
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pair_polymorphic.html
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pair_quip.html
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2016-07-31 00:08:42 +08:00
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pair_reax.html
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2016-05-12 21:58:19 +08:00
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pair_reax_c.html
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pair_resquared.html
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pair_sdk.html
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pair_smd_hertz.html
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pair_smd_tlsph.html
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pair_smd_triangulated_surface.html
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pair_smd_ulsph.html
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pair_smtbq.html
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2016-07-31 00:08:42 +08:00
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pair_snap.html
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pair_soft.html
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2016-05-12 21:58:19 +08:00
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pair_sph_heatconduction.html
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pair_sph_idealgas.html
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pair_sph_lj.html
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pair_sph_rhosum.html
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pair_sph_taitwater.html
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pair_sph_taitwater_morris.html
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pair_srp.html
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pair_sw.html
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pair_table.html
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2016-07-31 00:08:42 +08:00
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pair_table_rx.html
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2016-05-12 21:58:19 +08:00
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pair_tersoff.html
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pair_tersoff_mod.html
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pair_tersoff_zbl.html
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pair_thole.html
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pair_tri_lj.html
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pair_vashishta.html
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pair_yukawa.html
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pair_yukawa_colloid.html
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pair_zbl.html
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2016-07-31 00:08:42 +08:00
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pair_zero.html
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2016-05-12 21:58:19 +08:00
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bond_class2.html
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bond_fene.html
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2016-07-31 00:08:42 +08:00
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bond_fene_expand.html
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2016-05-12 21:58:19 +08:00
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bond_harmonic.html
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bond_harmonic_shift.html
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bond_harmonic_shift_cut.html
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bond_hybrid.html
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bond_morse.html
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2016-07-31 00:08:42 +08:00
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bond_none.html
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2016-05-12 21:58:19 +08:00
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bond_nonlinear.html
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bond_quartic.html
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bond_table.html
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2016-07-31 00:08:42 +08:00
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bond_zero.html
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2016-05-12 21:58:19 +08:00
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angle_charmm.html
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angle_class2.html
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angle_cosine.html
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angle_cosine_delta.html
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angle_cosine_periodic.html
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angle_cosine_shift.html
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angle_cosine_shift_exp.html
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angle_cosine_squared.html
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angle_dipole.html
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angle_fourier.html
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angle_fourier_simple.html
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angle_harmonic.html
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angle_hybrid.html
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2016-07-31 00:08:42 +08:00
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angle_none.html
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2016-05-12 21:58:19 +08:00
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angle_quartic.html
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angle_sdk.html
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angle_table.html
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2016-07-31 00:08:42 +08:00
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angle_zero.html
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2016-05-12 21:58:19 +08:00
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dihedral_charmm.html
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dihedral_class2.html
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dihedral_cosine_shift_exp.html
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dihedral_fourier.html
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dihedral_harmonic.html
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dihedral_helix.html
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dihedral_hybrid.html
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dihedral_multi_harmonic.html
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dihedral_nharmonic.html
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dihedral_none.html
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2016-05-12 21:58:19 +08:00
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dihedral_opls.html
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dihedral_quadratic.html
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2016-07-31 00:08:42 +08:00
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dihedral_spherical.html
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2016-05-12 21:58:19 +08:00
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dihedral_table.html
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2016-07-31 00:08:42 +08:00
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dihedral_zero.html
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2016-05-12 21:58:19 +08:00
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improper_class2.html
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improper_cossq.html
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improper_cvff.html
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improper_distance.html
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improper_fourier.html
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improper_harmonic.html
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improper_hybrid.html
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2016-07-31 00:08:42 +08:00
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improper_none.html
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2016-05-12 21:58:19 +08:00
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improper_ring.html
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improper_umbrella.html
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2016-07-31 00:08:42 +08:00
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improper_zero.html
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2016-05-12 22:14:39 +08:00
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2016-07-31 00:08:42 +08:00
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USER/atc/man_add_molecule.html
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USER/atc/man_add_species.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_atom_element_map.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_atom_weight.html
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USER/atc/man_atomic_charge.html
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USER/atc/man_boundary.html
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USER/atc/man_boundary_dynamics.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_boundary_faceset.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_boundary_integral.html
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USER/atc/man_consistent_fe_initialization.html
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USER/atc/man_contour_integral.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_control.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_control_momentum.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_control_thermal.html
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USER/atc/man_control_thermal_correction_max_iterations.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_decomposition.html
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USER/atc/man_electron_integration.html
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USER/atc/man_equilibrium_start.html
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USER/atc/man_extrinsic_exchange.html
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USER/atc/man_fe_md_boundary.html
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USER/atc/man_fem_mesh.html
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USER/atc/man_filter_scale.html
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USER/atc/man_filter_type.html
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USER/atc/man_fix_atc.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_fix_flux.html
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USER/atc/man_fix_nodes.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_hardy_computes.html
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USER/atc/man_hardy_fields.html
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USER/atc/man_hardy_gradients.html
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USER/atc/man_hardy_kernel.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_hardy_on_the_fly.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_hardy_rates.html
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USER/atc/man_initial.html
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USER/atc/man_internal_atom_integrate.html
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USER/atc/man_internal_element_set.html
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USER/atc/man_internal_quadrature.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_kernel_function.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_localized_lambda.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_lumped_lambda_solve.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_mask_direction.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_mass_matrix.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_material.html
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USER/atc/man_mesh_add_to_nodeset.html
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USER/atc/man_mesh_create.html
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USER/atc/man_mesh_create_elementset.html
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USER/atc/man_mesh_create_faceset_box.html
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USER/atc/man_mesh_create_faceset_plane.html
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USER/atc/man_mesh_create_nodeset.html
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USER/atc/man_mesh_delete_elements.html
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USER/atc/man_mesh_nodeset_to_elementset.html
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USER/atc/man_mesh_output.html
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USER/atc/man_mesh_quadrature.html
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USER/atc/man_mesh_read.html
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USER/atc/man_mesh_write.html
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USER/atc/man_momentum_time_integration.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_output.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_output_elementset.html
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USER/atc/man_output_nodeset.html
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USER/atc/man_pair_interactions.html
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USER/atc/man_poisson_solver.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_read_restart.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_remove_molecule.html
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USER/atc/man_remove_source.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_remove_species.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_reset_atomic_reference_positions.html
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USER/atc/man_reset_time.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_sample_frequency.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_set.html
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USER/atc/man_source.html
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USER/atc/man_source_integration.html
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USER/atc/man_temperature_definition.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_thermal_time_integration.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_time_filter.html
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USER/atc/man_track_displacement.html
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USER/atc/man_unfix_flux.html
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2016-05-12 22:14:39 +08:00
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USER/atc/man_unfix_nodes.html
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2016-07-31 00:08:42 +08:00
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USER/atc/man_write_atom_weights.html
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USER/atc/man_write_restart.html
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