forked from lijiext/lammps
124 lines
3.9 KiB
Plaintext
124 lines
3.9 KiB
Plaintext
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"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
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:link(lws,http://lammps.sandia.gov)
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:link(ld,Manual.html)
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:link(lc,Section_commands.html#comm)
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:line
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pair_style kim command :h3
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[Syntax:]
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pair_style kim model :pre
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model = name of KIM model (potential)
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[Examples:]
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pair_style kim model_Ar_P_Morse
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pair_coeff * * Ar Ar :pre
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[Description:]
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This pair style is a wrapper on the Knowledge Base for Interatomic
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Models (KIM) repository of interatomic potentials, so that they can be
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used by LAMMPS scripts.
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In KIM lingo, a potential is a "model" and a model contains both the
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analytic formulas that define the potential as well as the parameters
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needed to run it for one or more materials, including coefficients and
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cutoffs.
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The argument {model} is the name of the model for a specific potential
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as KIM defines it. In principle, LAMMPS can invoke any KIM model.
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You should get an error message from either LAMMPS or KIM if there is
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an incompatibility.
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Only a single pair_coeff command is used with the {kim} style which
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specifies the mapping of LAMMPS atom types to KIM elements. This is
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done by specifying N additional arguments after the "* *" in the
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pair_coeff command, where N is the number of LAMMPS atom types:
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N element names = mapping of KIM elements to atom types :ul
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As an example, imagine the KIM model supports Si and C atoms. If your
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LAMMPS simulation has 4 atoms types and you want the 1st 3 to be Si,
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and the 4th to be C, you would use the following pair_coeff command:
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pair_coeff * * Si Si Si C :pre
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The 1st 2 arguments must be * * so as to span all LAMMPS atom types.
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The first three Si arguments map LAMMPS atom types 1,2,3 to Si as
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defined within KIM. The final C argument maps LAMMPS atom type 4 to C
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as defined within KIM. If a mapping value is specified as NULL, the
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mapping is not performed. This can be used when a {kim} potential is
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used as part of the {hybrid} pair style. The NULL values are
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placeholders for atom types that will be used with other potentials.
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:line
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Where to look for error messages
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Some of the KIM models might fail to work with lammps. Check generated
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kim.log file for error messages.
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:line
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How to build KIM
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ENV variables
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setenv KIM_MODELS_DIR `pwd`/MODELs/
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setenv KIM_DIR `pwd`/
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setenv KIM_DYNAMIC yes
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It is required that OPENKIM directory with
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needed file structure is installed (can be downloaded from openkim.org)
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and needed environment variables are set:
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KIM_DIR = path openkim-api directory
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KIM_DYNAMIC -- if dynamic linking is used during building (default --static)
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KIM_MODELS_DIR = path to kim models directory (default -- $KIM_DIR/MODELs)
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See openkim-api/INSTALL for detailed instruction.
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:line
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[Mixing, shift, table, tail correction, restart, rRESPA info]:
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This pair style does not support the "pair_modify"_pair_modify.html
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mix, shift, table, and tail options.
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This pair style does not write its information to "binary restart
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files"_restart.html, since KIM stores the the potential parameters.
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Thus, you need to re-specify the pair_style and pair_coeff commands in
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an input script that reads a restart file.
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This pair style can only be used via the {pair} keyword of the
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"run_style respa"_run_style.html command. It does not support the
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{inner}, {middle}, {outer} keywords.
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:line
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[Restrictions:]
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This pair style is part of the KIM package. It is only enabled if
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LAMMPS was built with that package. See the "Making
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LAMMPS"_Section_start.html#start_3 section for more info.
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This pair style requires the "newton"_newton.html setting to be "off"
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for pair interactions.
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Currently this pair style only works with LAMMPS metal
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"units"_units.html, since KIM models are written using
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those units.
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Only KIM models that are using NEIGH-PURE-H, NEIGH-PURE-F and
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NEIGH-RVEC-F can be used with lammps. (see KIM documentation on NBC
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methods)
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[Related commands:]
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"pair_coeff"_pair_coeff.html, "pair_style eam"_pair_eam.html
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[Default:] none
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