2011-09-15 23:30:28 +08:00
|
|
|
"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
|
|
|
|
|
|
|
|
:link(lws,http://lammps.sandia.gov)
|
|
|
|
:link(ld,Manual.html)
|
|
|
|
:link(lc,Section_commands.html#comm)
|
|
|
|
|
|
|
|
:line
|
|
|
|
|
|
|
|
pair_style edip command :h3
|
|
|
|
|
|
|
|
[Syntax:]
|
|
|
|
|
|
|
|
pair_style edip :pre
|
2011-10-07 01:32:51 +08:00
|
|
|
pair_style edip/omp :pre
|
2011-09-15 23:30:28 +08:00
|
|
|
|
|
|
|
[Examples:]
|
|
|
|
|
|
|
|
pair_style edip
|
|
|
|
pair_coeff * * Si.edip Si
|
|
|
|
|
|
|
|
[Description:]
|
|
|
|
|
2011-09-15 23:43:23 +08:00
|
|
|
The {edip} style computes a 3-body "EDIP"_#EDIP potential which is
|
|
|
|
popular for modeling silicon materials where it can have advantages
|
|
|
|
over other models such as the "Stillinger-Weber"_pair_sw.html or
|
|
|
|
"Tersoff"_pair_tersoff.html potentials. In EDIP, the energy E of a
|
|
|
|
system of atoms is
|
2011-09-15 23:30:28 +08:00
|
|
|
|
|
|
|
:c,image(Eqs/pair_edip.jpg)
|
|
|
|
|
|
|
|
where phi2 is a two-body term and phi3 is a three-body term. The
|
|
|
|
summations in the formula are over all neighbors J and K of atom I
|
|
|
|
within a cutoff distance = a.
|
|
|
|
Both terms depend on the local environment of atom I through its
|
|
|
|
effective coordination number defined by Z, which is unity for a
|
|
|
|
cutoff distance < c and gently goes to 0 at distance = a.
|
|
|
|
|
|
|
|
Only a single pair_coeff command is used with the {edip} style which
|
|
|
|
specifies a EDIP potential file with parameters for all
|
|
|
|
needed elements. These are mapped to LAMMPS atom types by specifying
|
|
|
|
N additional arguments after the filename in the pair_coeff command,
|
|
|
|
where N is the number of LAMMPS atom types:
|
|
|
|
|
|
|
|
filename
|
|
|
|
N element names = mapping of EDIP elements to atom types :ul
|
|
|
|
|
2013-06-29 01:19:51 +08:00
|
|
|
See the "pair_coeff"_pair_coeff.html doc page for alternate ways
|
|
|
|
to specify the path for the potential file.
|
|
|
|
|
2011-09-15 23:30:28 +08:00
|
|
|
As an example, imagine a file Si.edip has EDIP values for Si.
|
|
|
|
|
|
|
|
EDIP files in the {potentials} directory of the LAMMPS
|
|
|
|
distribution have a ".edip" suffix. Lines that are not blank or
|
|
|
|
comments (starting with #) define parameters for a triplet of
|
|
|
|
elements. The parameters in a single entry correspond to the two-body
|
|
|
|
and three-body coefficients in the formula above:
|
|
|
|
|
|
|
|
element 1 (the center atom in a 3-body interaction)
|
|
|
|
element 2
|
|
|
|
element 3
|
|
|
|
A (energy units)
|
|
|
|
B (distance units)
|
|
|
|
cutoffA (distance units)
|
|
|
|
cutoffC (distance units)
|
|
|
|
alpha
|
|
|
|
beta
|
|
|
|
eta
|
|
|
|
gamma (distance units)
|
|
|
|
lambda (energy units)
|
|
|
|
mu
|
|
|
|
tho
|
|
|
|
sigma (distance units)
|
|
|
|
Q0
|
|
|
|
u1
|
|
|
|
u2
|
|
|
|
u3
|
|
|
|
u4 :ul
|
|
|
|
|
|
|
|
The A, B, beta, sigma parameters are used only for two-body interactions.
|
|
|
|
The eta, gamma, lambda, mu, Q0 and all u1 to u4 parameters are used only
|
|
|
|
for three-body interactions. The alpha and cutoffC parameters are used
|
|
|
|
for the coordination environment function only.
|
|
|
|
|
|
|
|
The EDIP potential file must contain entries for all the
|
|
|
|
elements listed in the pair_coeff command. It can also contain
|
|
|
|
entries for additional elements not being used in a particular
|
|
|
|
simulation; LAMMPS ignores those entries.
|
|
|
|
|
|
|
|
For a single-element simulation, only a single entry is required
|
|
|
|
(e.g. SiSiSi). For a two-element simulation, the file must contain 8
|
|
|
|
entries (for SiSiSi, SiSiC, SiCSi, SiCC, CSiSi, CSiC, CCSi, CCC), that
|
|
|
|
specify EDIP parameters for all permutations of the two elements
|
|
|
|
interacting in three-body configurations. Thus for 3 elements, 27
|
|
|
|
entries would be required, etc.
|
|
|
|
|
|
|
|
At the moment, only a single element parametrization is
|
|
|
|
implemented. However, the author is not aware of other
|
|
|
|
multi-element EDIP parametrizations. If you know any and
|
|
|
|
you are interest in that, please contact the author of
|
|
|
|
the EDIP package.
|
|
|
|
|
|
|
|
:line
|
|
|
|
|
2011-12-14 04:35:35 +08:00
|
|
|
Styles with a {cuda}, {gpu}, {omp}, or {opt} suffix are functionally
|
|
|
|
the same as the corresponding style without the suffix. They have
|
|
|
|
been optimized to run faster, depending on your available hardware, as
|
|
|
|
discussed in "Section_accelerate"_Section_accelerate.html of the
|
|
|
|
manual. The accelerated styles take the same arguments and should
|
|
|
|
produce the same results, except for round-off and precision issues.
|
2011-10-07 01:32:51 +08:00
|
|
|
|
|
|
|
These accelerated styles are part of the USER-CUDA, GPU, USER-OMP and OPT
|
|
|
|
packages, respectively. They are only enabled if LAMMPS was built with
|
|
|
|
those packages. See the "Making LAMMPS"_Section_start.html#start_3
|
|
|
|
section for more info.
|
|
|
|
|
|
|
|
You can specify the accelerated styles explicitly in your input script
|
|
|
|
by including their suffix, or you can use the "-suffix command-line
|
2012-01-28 07:39:14 +08:00
|
|
|
switch"_Section_start.html#start_7 when you invoke LAMMPS, or you can
|
2011-10-07 01:32:51 +08:00
|
|
|
use the "suffix"_suffix.html command in your input script.
|
|
|
|
|
2011-12-14 04:35:35 +08:00
|
|
|
See "Section_accelerate"_Section_accelerate.html of the manual for
|
|
|
|
more instructions on how to use the accelerated styles effectively.
|
2011-10-07 01:32:51 +08:00
|
|
|
|
|
|
|
:line
|
|
|
|
|
2011-09-15 23:30:28 +08:00
|
|
|
[Mixing, shift, table, tail correction, restart, rRESPA info]:
|
|
|
|
|
|
|
|
This pair style does not support the "pair_modify"_pair_modify.html
|
|
|
|
shift, table, and tail options.
|
|
|
|
|
|
|
|
This pair style does not write its information to "binary restart
|
|
|
|
files"_restart.html, since it is stored in potential files. Thus, you
|
|
|
|
need to re-specify the pair_style and pair_coeff commands in an input
|
|
|
|
script that reads a restart file.
|
|
|
|
|
|
|
|
This pair style can only be used via the {pair} keyword of the
|
|
|
|
"run_style respa"_run_style.html command. It does not support the
|
|
|
|
{inner}, {middle}, {outer} keywords.
|
|
|
|
|
|
|
|
:line
|
|
|
|
|
|
|
|
[Restrictions:]
|
|
|
|
|
|
|
|
This angle style can only be used if LAMMPS was built with the
|
|
|
|
USER-MISC package. See the "Making LAMMPS"_Section_start.html#start_3
|
|
|
|
section for more info on packages.
|
|
|
|
|
|
|
|
This pair style requires the "newton"_newton.html setting to be "on"
|
|
|
|
for pair interactions.
|
|
|
|
|
|
|
|
The EDIP potential files provided with LAMMPS (see the potentials directory)
|
|
|
|
are parameterized for metal "units"_units.html.
|
|
|
|
You can use the SW potential with any LAMMPS units, but you would need
|
|
|
|
to create your own EDIP potential file with coefficients listed in the
|
|
|
|
appropriate units if your simulation doesn't use "metal" units.
|
|
|
|
|
|
|
|
[Related commands:]
|
|
|
|
|
|
|
|
"pair_coeff"_pair_coeff.html
|
|
|
|
|
|
|
|
[Default:] none
|
|
|
|
|
|
|
|
:line
|
|
|
|
|
|
|
|
:link(EDIP)
|
|
|
|
[(EDIP)] J. F. Justo et al., Phys. Rev. B 58, 2539 (1998).
|