2006-09-22 00:22:34 +08:00
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"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
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:link(lws,http://lammps.sandia.gov)
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:link(ld,Manual.html)
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:link(lc,Section_commands.html#comm)
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:line
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minimize command :h3
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[Syntax:]
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minimize tolerance maxiter maxeval :pre
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tolerance = stopping tolerance
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maxiter = max iterations of minimizer
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maxeval = max number of total force/energy evaluations :ul
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[Examples:]
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minimize 1.0e-4 100 1000 :pre
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[Description:]
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Perform an energy minimization of the system, by adjusting each atom's
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atomic coordinates. The algorithm used is set by the
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"min_style"_min_style.html command. Minimize commands can be
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interspersed with "run"_run.html commands to alternate between
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relaxation and dynamics. The minimizers are implemented in a robust
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fashion that should allow for systems with highly overlapped atoms
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(large energies and forces) to still be minimized by pushing the atoms
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off of each other.
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2007-06-26 08:03:39 +08:00
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Following the minimization a statistical summary is printed that
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includes the energy change and convergence criteria information.
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2006-09-22 00:22:34 +08:00
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A minimization involves an outer iteration loop which sets the search
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direction along which coordinates are changed. An inner iteration is
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then performed using a line search algorithm. The line search
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typically evaluates forces and energies several times to set new
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coordinates. The minimization stops if any of several criteria are
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met:
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the change in energy between outer iterations is less than the tolerance
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the number of outer iterations exceeds maxiter
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the number of force evaluations exceeds maxeval
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the 3N dimensional force vector goes (nearly) to zero :ul
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For the first criterion, the specified tolerance is unitless; it is
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met when the ratio of the energy delta to the energy magnitude is
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equal to the tolerance (e.g. one part in 10^4 in the example above).
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During a minimization, the outer iteration count is treated as a
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timestep. Output is triggered by this timestep, e.g. thermodynamic
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output or dump and restart files.
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For optimal convergence, a "pair style"_pair_style.html that goes
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smoothly to 0.0 at the cutoff distance for both energy and force
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should typically be used though this is not required. Examples
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include {pair/lj/charmm/coul/charmm} and {pair/lj/charmm/coul/long}.
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If a {soft} potential is used the Astop value is used for the
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prefactor (no time dependence).
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2007-06-26 08:03:39 +08:00
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Only some fixes (typically those that apply force constraints) are
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invoked during minimization. See the doc pages for individual
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"fix"_fix.html commands to see which ones are relevant.
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2006-09-22 00:22:34 +08:00
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2007-06-26 08:03:39 +08:00
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IMPORTANT NOTE: Some fixes which are invoked during minimization have
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an associated potential energy. For that energy to be included in the
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total potential energy of the system (the quantity being minimized),
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you MUST enable the "fix_modify"_fix_modify.html {energy} option for
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that fix. The doc pages for individual "fix"_fix.html commands
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specify if this should be done.
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2006-09-22 00:22:34 +08:00
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[Restrictions:]
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2007-06-26 08:03:39 +08:00
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Features that are not yet implemented are listed here, in case someone
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2006-09-22 00:22:34 +08:00
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knows how they could be coded:
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2007-03-28 00:56:45 +08:00
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It is an error to use "fix shake"_fix_shake.html with minimization
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because it turns off bonds that should be included in the potential
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energy of the system. The effect of a fix shake can be approximated
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during a minimization by using stiff spring constants for the bonds
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and/or angles that would normally be constrained by the SHAKE
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algorithm.
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2007-03-28 01:01:13 +08:00
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"Fix rigid"_fix_rigid.html is also not supported by minimization. It
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is not an error to have it defined, but the energy minimization will
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not keep the defined body(s) rigid during the minimization. Note that
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if bonds, angles, etc internal to a rigid body have been turned off
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(e.g. via "neigh_modify exclude"_neigh_modify.html), they will not
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contribute to the potential energy which is probably not what is
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desired.
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2006-09-22 00:22:34 +08:00
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The volume of the simulation domain is not allowed to change during a
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minimzation. Ideally we would allow a fix such as {npt} to impose an
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external pressure that would be included in the minimization
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(i.e. allow the box dimensions to change), but this has not yet been
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implemented.
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[Related commands:]
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"min_modify"_min_modify.html, "min_style"_min_style.html,
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"run_style"_run_style.html
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[Default:] none
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