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この中二病に爆焔を! 2024-02-15 14:36:00 +08:00
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commit 71ab9ba0ab
17 changed files with 543 additions and 10 deletions

30
@export/CDF.d.ts vendored Normal file
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// export R# package module type define for javascript/typescript language
//
// imports "CDF" from "Darwinism";
//
// ref=Darwinism.CDF@Darwinism, Version=1.0.0.0, Culture=neutral, PublicKeyToken=null
/**
*
*/
declare namespace CDF {
/**
* open a connection to the netcdf file
*
*
* @param file -
* @return the file stream id
*/
function open(file: string): object;
/**
* get variable data from given file
*
*
* @param nc -
* @param name -
*/
function var_data(nc: object, name: string): any;
/**
*/
function vars(nc: object): string;
}

7
man/Darwinism/CDF/CDF.md Normal file
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# CDF
+ [open](CDF/open.1) open a connection to the netcdf file
+ [vars](CDF/vars.1)
+ [var_data](CDF/var_data.1) get variable data from given file

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.\" man page create by R# package system.
.TH CDF 1 2000-Jan "open" "open"
.SH NAME
open \- open a connection to the netcdf file
.SH SYNOPSIS
\fIopen(\fBfile\fR as string);\fR
.SH DESCRIPTION
.PP
open a connection to the netcdf file
.PP
.SH OPTIONS
.PP
\fBfile\fB \fR\- -.
.PP
.SH VALUE
.PP
the file stream id
.PP
.SH SEE ALSO
CDF
.SH FILES
.PP
Darwinism.dll
.PP

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.\" man page create by R# package system.
.TH CDF 1 2000-Jan "var_data" "var_data"
.SH NAME
var_data \- get variable data from given file
.SH SYNOPSIS
\fIvar_data(\fBnc\fR as <generic> DataReader,
\fBname\fR as string);\fR
.SH DESCRIPTION
.PP
get variable data from given file
.PP
.SH OPTIONS
.PP
\fBnc\fB \fR\- -.
.PP
.PP
\fBname\fB \fR\- -.
.PP
.SH SEE ALSO
CDF
.SH FILES
.PP
Darwinism.dll
.PP

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.\" man page create by R# package system.
.TH CDF 1 2000-Jan "vars" "vars"
.SH NAME
vars \-
.SH SYNOPSIS
\fIvars(\fBnc\fR as <generic> DataReader);\fR
.SH SEE ALSO
CDF
.SH FILES
.PP
Darwinism.dll
.PP

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<!DOCTYPE html><html lang="zh-CN">
<head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8" />
<meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, minimum-scale=1.0, maximum-scale=1.0" />
<title>CDF</title>
<meta name="author" content="xie.guigang@gcmodeller.org" />
<meta name="copyright" content="SMRUCC genomics Copyright (c) 2022" />
<meta name="keywords" content="R#; CDF; Darwinism" />
<meta name="generator" content="https://github.com/rsharp-lang" />
<meta name="theme-color" content="#333" />
<meta name="description" content="..." />
<meta class="foundation-data-attribute-namespace" />
<meta class="foundation-mq-xxlarge" />
<meta class="foundation-mq-xlarge" />
<meta class="foundation-mq-large" />
<meta class="foundation-mq-medium" />
<meta class="foundation-mq-small" />
<meta class="foundation-mq-topbar" />
<style>
.table-three-line {
border-collapse:collapse; /* 关键属性:合并表格内外边框(其实表格边框有2px外面1px里面还有1px哦) */
border:solid #000000; /* 设置边框属性;样式(solid=实线)、颜色(#999=灰) */
border-width:2px 0 2px 0px; /* 设置边框状粗细:上 右 下 左 = 对应1px 0 0 1px */
}
.left-1{
border:solid #000000;border-width:1px 1px 2px 0px;padding:2px;
font-weight:bolder;
}
.right-1{
border:solid #000000;border-width:1px 0px 2px 1px;padding:2px;
font-weight:bolder;
}
.mid-1{
border:solid #000000;border-width:1px 1px 2px 1px;padding:2px;
font-weight:bolder;
}
.left{
border:solid #000000;border-width:1px 1px 1px 0px;padding:2px;
}
.right{
border:solid #000000;border-width:1px 0px 1px 1px;padding:2px;
}
.mid{
border:solid #000000;border-width:1px 1px 1px 1px;padding:2px;
}
table caption {font-size:14px;font-weight:bolder;}
</style>
</head>
<body>
<table width="100%" summary="page for {CDF}">
<tbody>
<tr>
<td>{CDF}</td>
<td style="text-align: right;">R# Documentation</td>
</tr>
</tbody>
</table>
<h1>CDF</h1>
<hr />
<p style=" font-size: 1.125em; line-height: .8em; margin-left: 0.5%; background-color: #fbfbfb; padding: 24px; ">
<code>
<span style="color: blue;">require</span>(<span style="color: black; font-weight: bold;">Darwinism</span>);
<br /><br /><span style="color: green;">{$desc_comments}</span><br /><span style="color: blue;">imports</span><span style="color: brown"> "CDF"</span><span style="color: blue;"> from</span><span style="color: brown"> "Darwinism"</span>;
</code>
</p>
<p></p>
<blockquote>
<p style="font-style: italic; font-size: 0.9em;">
</p>
</blockquote>
<div id="main-wrapper">
<table class="table-three-line" style="display: none">
<caption>.NET clr type export</caption>
<tbody></tbody>
</table>
<br />
<br />
<table class="table-three-line">
<caption>.NET clr function exports</caption>
<tbody><tr>
<td id="open">
<a href="./CDF/open.html">open</a>
</td>
<td><p>open a connection to the netcdf file</p></td>
</tr>
<tr>
<td id="vars">
<a href="./CDF/vars.html">vars</a>
</td>
<td></td>
</tr>
<tr>
<td id="var_data">
<a href="./CDF/var_data.html">var_data</a>
</td>
<td><p>get variable data from given file</p></td>
</tr></tbody>
</table>
</div>
<hr />
<div style="text-align: center;">[<a href="../index.html">Document Index</a>]</div>
</body>
</html>

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<!DOCTYPE html>
<html>
<head>
<title>open a connection to the netcdf file</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
<link rel="stylesheet" type="text/css" href="../../_assets/page.css">
</head>
<body>
<div class="container">
<table style="width: 100%;">
<tr>
<td>open {CDF}</td>
<td style="text-align: right;">R Documentation</td>
</tr>
</table>
<h2>open a connection to the netcdf file</h2>
<h3>Description</h3>
<h3>Usage</h3>
<div style="width: 100%; padding-left: 3%; color: black;">
<pre><code class='language-R' style="color: black; font-weight:normal;"><strong>open</strong>(<i>file</i>);</code></pre>
</div>
<h3>Arguments</h3>
<table>
<dt>file</dt>
<dd><p><p>-</p></p></dd>
</table>
<h3 style="display: none;">Details</h3>
<h3 style="display: block">Authors</h3>
Darwinism
<h3>Value</h3>
<p>the file stream id</p><h4>clr value class</h4><ul><li><a href="/vignettes/clr/CDF/PInvoke/DataReader.html">DataReader</a></li></ul>
<h3 style="display: none;">Examples</h3>
<hr />
<div style="text-align: center;">[Package <em>CDF</em> version 1.0.0.0 <a
href="../CDF.html">Index</a>]
</div>
</div>
</body>
<script type="text/javascript" src="../../_assets/R_syntax.js"></script>
<script type="text/javascript" src="../../_assets/highlights.js"></script>
<script type="text/javascript">r_highlights("example_r");</script>
</html>

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<!DOCTYPE html>
<html>
<head>
<title>get variable data from given file</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
<link rel="stylesheet" type="text/css" href="../../_assets/page.css">
</head>
<body>
<div class="container">
<table style="width: 100%;">
<tr>
<td>var_data {CDF}</td>
<td style="text-align: right;">R Documentation</td>
</tr>
</table>
<h2>get variable data from given file</h2>
<h3>Description</h3>
<h3>Usage</h3>
<div style="width: 100%; padding-left: 3%; color: black;">
<pre><code class='language-R' style="color: black; font-weight:normal;"><strong>var_data</strong>(<i>nc</i>, <i>name</i>);</code></pre>
</div>
<h3>Arguments</h3>
<table>
<dt>nc</dt>
<dd><p><p>-</p></p></dd>
<dt>name</dt>
<dd><p><p>-</p></p></dd>
</table>
<h3 style="display: none;">Details</h3>
<h3 style="display: block">Authors</h3>
Darwinism
<h3>Value</h3>
this function returns data object of type <i>any</i> kind.<h4>clr value class</h4><ul><li><i>any</i> kind</li></ul>
<h3 style="display: none;">Examples</h3>
<hr />
<div style="text-align: center;">[Package <em>CDF</em> version 1.0.0.0 <a
href="../CDF.html">Index</a>]
</div>
</div>
</body>
<script type="text/javascript" src="../../_assets/R_syntax.js"></script>
<script type="text/javascript" src="../../_assets/highlights.js"></script>
<script type="text/javascript">r_highlights("example_r");</script>
</html>

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<!DOCTYPE html>
<html>
<head>
<title>vars</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
<link rel="stylesheet" type="text/css" href="../../_assets/page.css">
</head>
<body>
<div class="container">
<table style="width: 100%;">
<tr>
<td>vars {CDF}</td>
<td style="text-align: right;">R Documentation</td>
</tr>
</table>
<h2>vars</h2>
<h3>Description</h3>
vars
<h3>Usage</h3>
<div style="width: 100%; padding-left: 3%; color: black;">
<pre><code class='language-R' style="color: black; font-weight:normal;"><strong>vars</strong>(<i>nc</i>);</code></pre>
</div>
<h3>Arguments</h3>
<table>
</table>
<h3 style="display: none;">Details</h3>
<h3 style="display: block">Authors</h3>
Darwinism
<h3>Value</h3>
this function returns data object of type string.<h4>clr value class</h4><ul><li>string</li></ul>
<h3 style="display: none;">Examples</h3>
<hr />
<div style="text-align: center;">[Package <em>CDF</em> version 1.0.0.0 <a
href="../CDF.html">Index</a>]
</div>
</div>
</body>
<script type="text/javascript" src="../../_assets/R_syntax.js"></script>
<script type="text/javascript" src="../../_assets/highlights.js"></script>
<script type="text/javascript">r_highlights("example_r");</script>
</html>

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<!DOCTYPE html>
<html>
<head>
<title>CDF.PInvoke.DataReader</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
<link rel="stylesheet" type="text/css" href="../../_assets/page.css">
</head>
<body>
<div class="container">
<table style="width: 100%;">
<tr>
<td>DataReader {CDF.PInvoke}</td>
<td style="text-align: right;">.NET clr documentation</td>
</tr>
</table>
<h2>DataReader</h2>
<h3>Description</h3>
<h3>Declare</h3>
<pre>
<code id="clr_ts">
# namespace CDF.PInvoke
export class DataReader {
error_no: integer;
vars: string;
}
</code>
</pre>
<h3>.NET clr type reference tree</h3>
this clr type has no other .net clr type reference.
<hr />
<div style="text-align: center;">[Package <em>{$package}</em> version {$version} <a
href="../{$package}.html">Index</a>]
</div>
</div>
</body>
<script type="text/javascript" src="../../_assets/R_syntax.js"></script>
<script type="text/javascript" src="../../_assets/highlights.js"></script>
<script type="text/javascript">r_highlights("clr_ts");</script>
</html>

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<!DOCTYPE html>
<html>
<head>
<title>Darwinism.Centos.netstat</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
<link rel="stylesheet" type="text/css" href="../../_assets/page.css">
</head>
<body>
<div class="container">
<table style="width: 100%;">
<tr>
<td>netstat {Darwinism.Centos}</td>
<td style="text-align: right;">.NET clr documentation</td>
</tr>
</table>
<h2>netstat</h2>
<h3>Description</h3>
<p>sudo yum install net-tools</p>
<h3>Declare</h3>
<pre>
<code id="clr_ts">
# namespace Darwinism.Centos
export class netstat {
ForeignAddress: string;
LocalAddress: string;
LocalListenPort: integer;
# PID/Program name
Program: string;
Proto: string;
RecvQ: string;
SendQ: string;
State: string;
}
</code>
</pre>
<h3>.NET clr type reference tree</h3>
this clr type has no other .net clr type reference.
<hr />
<div style="text-align: center;">[Package <em>{$package}</em> version {$version} <a
href="../{$package}.html">Index</a>]
</div>
</div>
</body>
<script type="text/javascript" src="../../_assets/R_syntax.js"></script>
<script type="text/javascript" src="../../_assets/highlights.js"></script>
<script type="text/javascript">r_highlights("clr_ts");</script>
</html>

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@ -30,8 +30,8 @@
<code id="clr_ts">
# namespace Darwinism.Docker.Arguments
export class Image {
Publisher: string;
Package: string;
Publisher: string;
}
</code>
</pre>

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@ -30,13 +30,13 @@
<code id="clr_ts">
# namespace Darwinism.Docker.Arguments
export class Mount {
# 任何一个路径是空字符串就会被判断为无效参数, 对于<a href="/vignettes/clr/Darwinism/Docker/Arguments/Mount.html">Mount</a>.<a href="#">local</a>本地文件夹路径
# 还需要其存在于本地文件系统之上
IsValid: boolean;
# 宿主机内的本地文件夹全路径
local: string;
# 虚拟机内的文件路径,共享文件夹将会在虚拟机内被挂载到这个路径上面
virtual: string;
# 任何一个路径是空字符串就会被判断为无效参数, 对于<a href="/vignettes/clr/Darwinism/Docker/Arguments/Mount.html">Mount</a>.<a href="#">local</a>本地文件夹路径
# 还需要其存在于本地文件系统之上
IsValid: boolean;
}
</code>
</pre>

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@ -30,8 +30,8 @@
<code id="clr_ts">
# namespace Darwinism.Docker
export class Environment {
Shared: <a href="/vignettes/clr/Darwinism/Docker/Arguments/Mount.html">Mount[]</a>;
container: <a href="/vignettes/clr/Darwinism/Docker/Arguments/Image.html">Image</a>;
Shared: <a href="/vignettes/clr/Darwinism/Docker/Arguments/Mount.html">Mount[]</a>;
}
</code>
</pre>
@ -39,8 +39,8 @@ export class Environment {
<h3>.NET clr type reference tree</h3>
<ol>
<li>use by <i>property</i> member <code>Shared</code>: <a href="/vignettes/clr/Darwinism/Docker/Arguments/Mount.html">Mount</a></li>
<li>use by <i>property</i> member <code>container</code>: <a href="/vignettes/clr/Darwinism/Docker/Arguments/Image.html">Image</a></li>
<li>use by <i>property</i> member <code>Shared</code>: <a href="/vignettes/clr/Darwinism/Docker/Arguments/Mount.html">Mount</a></li>
</ol>

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@ -34,13 +34,13 @@
<code id="clr_ts">
# namespace Microsoft.VisualBasic.DataMining.KMeans
export class ClusterEntity extends <a href="/vignettes/clr/Microsoft/VisualBasic/DataMining/ComponentModel/EntityBase`1.html">EntityBase`1</a> {
# the unique reference id of current entity object
uid: string;
# the cluster class label
cluster: integer;
# the point data vector
entityVector: double;
Length: integer;
# the unique reference id of current entity object
uid: string;
}
</code>
</pre>

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@ -31,11 +31,11 @@
# namespace batch
export class Argument {
debugPort: integer;
verbose: boolean;
ignoreError: boolean;
libpath: string;
n_threads: integer;
thread_interval: integer;
libpath: string;
verbose: boolean;
}
</code>
</pre>

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@ -20,6 +20,7 @@ RoxygenNote: 7.1.1
</ul>
<h2>Library: Darwinism.dll</h2>
<ul>
<li><a href="./Darwinism/CDF.html">CDF</a></li>
<li><a href="./Darwinism/Environment.html">Environment</a></li>
<li><a href="./Darwinism/Math.html">Math</a></li>
<li><a href="./Darwinism/bash.html">bash</a></li>