27 lines
1.3 KiB
Plaintext
27 lines
1.3 KiB
Plaintext
SeaView is a multiplatform, graphical user interface for multiple
|
|
sequence alignment and molecular phylogeny. Features:
|
|
|
|
- Reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
|
|
PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic
|
|
trees.
|
|
- Drives programs muscle or Clustal Omega for multiple sequence
|
|
alignment, and also allows to use any external alignment
|
|
algorithm able to read and write FASTA-formatted files.
|
|
- Drives the Gblocks program to select blocks of evolutionarily
|
|
conserved sites.
|
|
- Computes phylogenetic trees by parsimony, using PHYLIP's dnapars /
|
|
protpars algorithm, distance, with NJ or BioNJ algorithms on a variety
|
|
of evolutionary distances, maximum likelihood, driving program PhyML
|
|
- Can use the Transfer Bootstrap Expectation method to compute the
|
|
bootstrap support of PhyML and distance trees.
|
|
- Uses the Treerecs method to reconcile gene and species trees.
|
|
- Prints and draws phylogenetic trees on screen, SVG, PDF or PostScript
|
|
files.
|
|
- Allows to download sequences from EMBL / GenBank / UniProt.
|
|
|
|
For details and citation:
|
|
Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a
|
|
multiplatform graphical user interface for sequence alignment and
|
|
phylogenetic tree building. Molecular Biology and Evolution
|
|
27(2):221-224.
|