| .. |
|
3D-ICE
|
academic/3D-ICE: Added (Thermal Emulator Library).
|
2022-12-03 11:30:33 +07:00 |
|
AlphaPlot
|
academic/AlphaPlot: Added (data analysis and visualization)
|
2022-04-30 13:51:47 +07:00 |
|
AstroImageJ
|
academic/AstroImageJ: Update to 5.3.2.00
|
2024-01-22 09:40:26 +07:00 |
|
CAFS_divergence
|
academic/CAFS_divergence: Fix ARCH section.
|
2023-05-20 11:17:57 +07:00 |
|
CAPS_coevolution
|
academic/CAPS_coevolution: Fix ARCH section.
|
2023-05-20 11:17:57 +07:00 |
|
DRAMPower
|
academic/DRAMPower: Fix github tarball handling.
|
2022-11-26 09:11:46 +07:00 |
|
DRAMSim2
|
academic/DRAMSim2: Added (A cycle accurate DRAM simulator)
|
2022-10-15 10:47:28 +07:00 |
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DRAMSys
|
academic/DRAMSys: Fix github tarball handling.
|
2023-01-07 08:13:28 +07:00 |
|
DRAMsim3
|
academic/DRAMsim3: Fix github tarball handling.
|
2022-11-05 21:15:16 +07:00 |
|
Data2FCS
|
academic/Data2FCS: Use zulu-openjdk11.
|
2022-03-03 15:56:48 +07:00 |
|
DendroPy
|
academic/DendroPy: Updated for version 4.5.1.
|
2022-09-08 08:11:03 +01:00 |
|
EMBASSY
|
academic/EMBASSY: Update binaries location.
|
2022-07-29 22:21:46 +07:00 |
|
EMBOSS
|
academic/EMBOSS: Update binaries location.
|
2022-07-29 22:20:39 +07:00 |
|
FCSalyzer
|
academic/FCSalyzer: Handle url-encoded filenames.
|
2022-03-05 00:17:45 +13:00 |
|
FastTree
|
academic/FastTree: Added (Infers approximately-ML phylogenetic).
|
2023-09-11 15:05:54 +07:00 |
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FigTree
|
academic/FigTree: Add (A graphical viewer of phylogenetic trees).
|
2023-09-11 14:31:54 +07:00 |
|
FreeFem
|
academic/FreeFem: Updated for version 4.14.
|
2023-12-13 01:48:21 +07:00 |
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Gabedit
|
academic/Gabedit: Install references.
|
2022-07-09 10:06:07 +07:00 |
|
Gblocks
|
academic/Gblocks: Update script.
|
2023-09-13 21:34:07 +07:00 |
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GeoGebra
|
academic/GeoGebra: Use zulu-openjdk7.
|
2022-03-03 15:56:45 +07:00 |
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Gridcoin-Research
|
academic/Gridcoin-Research: Updated for version 5.4.8.0
|
2024-05-04 21:45:29 +07:00 |
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HMMER
|
academic/HMMER: Updated for version 3.4.
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2023-09-13 21:53:45 +07:00 |
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IGV
|
academic/IGV: Updated for version 2.16.2.
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2023-09-17 00:10:15 +07:00 |
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ITK
|
academic/ITK: Fix build.
|
2024-03-12 23:46:52 +07:00 |
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Isabelle
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academic/Isabelle: Added (proof assistant).
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2023-07-18 08:47:19 +07:00 |
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Kst
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academic/Kst: Updated for version 20221025_5fdd819.
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2023-02-22 12:09:51 +07:00 |
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MetaPhlAn2
|
academic/MetaPhlAn2: Fix github URL.
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2024-04-05 15:18:04 +07:00 |
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NWChem
|
academic/NWChem: Added (High-Performance Computational Chemistry)
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2022-12-10 07:43:12 +07:00 |
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OpenFOAM
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academic/OpenFOAM: Updated for version 11.
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2023-12-22 08:47:16 +07:00 |
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OpenMM
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academic/OpenMM: Fix github tarball handling.
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2022-11-05 21:15:16 +07:00 |
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OpenVSP
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academic/OpenVSP: Updated for version 3.35.3.
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2024-06-15 07:37:49 +07:00 |
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PhyML
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academic/PhyML: Updated for version 3.3.20220408.
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2022-09-04 13:49:57 +01:00 |
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PyAMG
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academic/PyAMG: Fix redundant deps.
|
2023-12-22 07:59:38 +07:00 |
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R
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academic/R: Updated for version 4.4.0.
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2024-05-04 21:45:24 +07:00 |
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RAxML
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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RepeatMasker
|
academic/RepeatMasker: Updated for version 4.1.5.
|
2023-09-17 00:10:17 +07:00 |
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STAR
|
academic/STAR:Upgrade to version 2.7.11b
|
2024-01-30 07:48:15 +07:00 |
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SU2
|
academic/SU2: Add network warning to README.
|
2023-09-23 11:33:27 +07:00 |
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SeqMonk
|
academic/SeqMonk: Updated for version 1.48.1.
|
2022-08-06 20:16:13 +07:00 |
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Shark
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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SimEng
|
academic/SimEng: Fix github tarball handling.
|
2022-11-26 09:11:46 +07:00 |
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TreeGraph
|
academic/TreeGraph: Use zulu-openjdk11.
|
2022-03-03 15:56:48 +07:00 |
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ViennaRNA
|
academic/ViennaRNA: upgrade to version 2.6.4; edit README
|
2023-10-10 06:34:40 +07:00 |
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WEVOTE
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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WolframEngine
|
academic/WolframEngine: Updated for version 14.0.0.
|
2024-04-13 22:03:51 +07:00 |
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WordNet
|
academic/WordNet: Change i486 to i586
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2022-06-07 02:23:02 -04:00 |
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ZeGrapher
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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abntex
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academic/abntex: Updated for version 20200715_f0a4d3c.
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2022-02-27 22:29:04 -06:00 |
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acl2
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academic/acl2: Added (Computational Logic for LiSP).
|
2023-07-18 09:31:16 +07:00 |
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aenig4
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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aeskulap
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academic/aeskulap: Fix shebang.
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2022-04-09 15:45:58 +07:00 |
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aline
|
academic/aline: update source.
|
2023-09-11 22:18:50 +07:00 |
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aliview
|
academic/aliview: Updated for version 1.28.
|
2022-07-29 21:57:48 +07:00 |
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amd
|
academic/amd: Align with template.
|
2023-05-20 11:17:28 +07:00 |
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amplicon
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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amplifx
|
academic/amplifx: Fix ARCH section.
|
2023-05-20 11:17:57 +07:00 |
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antiprism
|
academic/antiprism: Change i486 to i586
|
2022-06-07 02:23:02 -04:00 |
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archaeopteryx
|
academic/archaeopteryx: Use zulu-openjdk11.
|
2022-03-03 15:56:50 +07:00 |
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aris
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academic/aris: New maintainer. Update patch.
|
2022-08-13 10:40:37 +07:00 |
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arka
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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armadillo
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academic/armadillo: Fix download URL, doc dir.
|
2022-04-02 12:27:10 -04:00 |
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arpack
|
academic/arpack: Change i486 to i586
|
2022-06-07 02:23:02 -04:00 |
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arpack-ng
|
academic/arpack-ng: Updated for version 3.9.1
|
2024-01-13 07:14:25 +07:00 |
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artha
|
All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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avl
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All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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avogadroapp
|
academic/avogadroapp: Update README.
|
2023-11-06 06:10:13 +07:00 |
|
avogadrolibs
|
academic/avogadrolibs: Update README.
|
2023-11-06 06:09:03 +07:00 |
|
bcftools
|
academic/bcftools
|
2024-05-04 21:45:02 +07:00 |
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bedGraphToBigWig
|
academic/bedGraphToBigWig: Strip binary.
|
2022-04-04 12:54:04 -04:00 |
|
bedtools
|
academic/bedtools: Updated for version 2.31.0.
|
2023-06-20 19:46:04 +07:00 |
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biblesync
|
All: Support $PRINT_PACKAGE_NAME env var
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2021-07-17 21:55:09 +02:00 |
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bibletime
|
academic/bibletime: Update email address.
|
2022-06-09 13:19:35 -04:00 |
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bibus
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
biopython
|
academic/biopython: Updated for version 1.81.
|
2023-04-22 11:38:31 +07:00 |
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boinc
|
academic/boinc: Updated for version 7.24.1
|
2024-01-20 09:16:23 +07:00 |
|
bowtie
|
academic/bowtie: Updated for version 1.3.1.
|
2022-10-15 10:47:26 +07:00 |
|
bowtie2
|
academic/bowtie2: Upgrade to version 2.5.3
|
2024-01-22 09:39:38 +07:00 |
|
bowtie2-legacy
|
academic/bowtie2-legacy: Patch source.
|
2022-03-03 09:38:11 +00:00 |
|
bpp-core
|
academic/bpp-core: Added (Bio++ Core Library)
|
2022-09-08 08:11:03 +01:00 |
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bpp-phyl
|
academic/bpp-phyl: Added (Bio++ Phylogenetic Library)
|
2022-09-08 08:11:03 +01:00 |
|
bpp-phyl-omics
|
academic/bpp-phyl-omics: Added (Bio++ Phylogenetic Omics Library)
|
2022-09-08 08:11:04 +01:00 |
|
bpp-popgen
|
academic/bpp-popgen: Added (Bio++ Population Genetics Library)
|
2022-09-08 08:11:04 +01:00 |
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bpp-seq
|
academic/bpp-seq: Added (Bio++ Sequence library)
|
2022-09-08 08:11:03 +01:00 |
|
bpp-seq-omics
|
academic/bpp-seq-omics: Added (Bio++ Sequence Omics Library)
|
2022-09-08 08:11:03 +01:00 |
|
bpp1.9-numcalc
|
academic/bpp1.9-numcalc: Added (Bio++ 1.9 NumCalc Library)
|
2022-09-09 02:55:53 +01:00 |
|
bpp1.9-phyl
|
academic/bpp1.9-phyl: Added (Bio++ 1.9 Phyl Library)
|
2022-09-09 03:07:45 +01:00 |
|
bpp1.9-seq
|
academic/bpp1.9-seq: Added (Bio++ 1.9 Seq Library)
|
2022-09-09 02:58:46 +01:00 |
|
bpp1.9-utils
|
academic/bpp1.9-utils: Added (Bio++ 1.9 Utils Library)
|
2022-09-09 02:53:27 +01:00 |
|
bppsuite
|
academic/bppsuite: Fix redundant deps.
|
2023-12-22 07:59:38 +07:00 |
|
btf
|
academic/btf: Align with template.
|
2023-05-20 11:17:28 +07:00 |
|
bwa
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
cadabra2
|
academic/cadabra2: Update dep.
|
2024-06-01 00:46:57 +07:00 |
|
calc
|
academic/calc: Updated for version 2.14.1.5.
|
2023-05-27 08:08:51 +07:00 |
|
calcoo
|
various: Use zulu jdk builds for REQUIRES.
|
2022-03-03 15:56:51 +07:00 |
|
camd
|
academic/camd: Align with template.
|
2023-05-20 11:17:28 +07:00 |
|
cap3
|
academic/cap3: DOWLOAD updated.
|
2022-08-06 20:16:08 +07:00 |
|
cblas
|
academic/cblas: Updated for version 3.12.0
|
2024-01-13 07:14:25 +07:00 |
|
ccolamd
|
academic/ccolamd: Align with template.
|
2023-05-20 11:17:29 +07:00 |
|
cdo
|
academic/cdo: Updated for version 2.4.1.
|
2024-05-27 14:04:24 +07:00 |
|
celestia
|
academic/celestia: Wrap README at 72 columns.
|
2022-03-12 14:34:16 -05:00 |
|
chartgeany
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
chemtool
|
academic/chemtool: Fix build failure with gcc10.
|
2022-02-21 02:41:03 -06:00 |
|
cholmod
|
academic/cholmod: Fix redundant deps.
|
2023-12-22 07:59:38 +07:00 |
|
cistrome-CEAS
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
cistrome-MACS
|
academic/cistrome-MACS: update source.
|
2023-09-11 22:18:50 +07:00 |
|
cistrome-conductGO
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
cistrome-extra
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
cistrome-mdseqpos
|
academic/cistrome-mdseqpos: Fix deps.
|
2022-11-12 22:33:12 +07:00 |
|
clark-ugene
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
cld2
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
clustalo
|
academic/clustalo: Remove .la files.
|
2022-03-08 09:44:26 +07:00 |
|
clustalw
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
clustalx
|
academic/clustalx: Updated to use qmake-qt5. BUILD bumped.
|
2022-08-06 20:16:07 +07:00 |
|
colamd
|
academic/colamd: Align with template.
|
2023-05-20 11:17:29 +07:00 |
|
colin
|
academic/colin: Use template TMP assignment.
|
2023-05-20 11:17:27 +07:00 |
|
convertall
|
academic/convertall: Fix docs.
|
2022-04-05 12:28:40 -04:00 |
|
copasi
|
academic/copasi: Updated for version 4.43.288.
|
2024-05-04 21:45:12 +07:00 |
|
cryptominisat
|
academic/cryptominisat: Fix build.
|
2024-03-24 17:43:58 +07:00 |
|
csparse
|
academic/csparse: Align with template.
|
2023-05-20 11:17:29 +07:00 |
|
cufflinks
|
academic/cufflinks: Fix info file.
|
2022-03-12 11:26:42 +13:00 |
|
cutadapt
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
cvc4
|
academic/cvc4: Update dependencies.
|
2023-12-02 07:54:23 +07:00 |
|
cxsparse
|
academic/cxsparse: Align with template.
|
2023-05-20 11:17:29 +07:00 |
|
dakota
|
academic/dakota: Fix redundant deps.
|
2023-12-22 07:59:38 +07:00 |
|
datamash
|
academic/datamash: Updated for version 1.8.
|
2022-09-04 04:44:58 +01:00 |
|
diamond
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
dimod
|
academic/dimod: Added (A shared API for samplers)
|
2022-11-12 22:32:58 +07:00 |
|
ds9
|
academic/ds9: Updated for version 8.4.1.
|
2023-02-04 07:19:56 +07:00 |
|
dwave-cloud-client
|
academic/dwave-cloud-client: Added (REST interface for D-Wave API)
|
2022-11-12 22:32:58 +07:00 |
|
dwave-greedy
|
academic/dwave-greedy: Added (steepest descent solver for (BQM))
|
2022-11-12 22:32:58 +07:00 |
|
dwave-hybrid
|
academic/dwave-hybrid: Added (Hybrid Async Decomposition Sampler)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-inspector
|
academic/dwave-inspector: Added (visualize D-Wave structured solver)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-neal
|
academic/dwave-neal: Fix redundant deps.
|
2023-12-22 07:59:38 +07:00 |
|
dwave-networkx
|
academic/dwave-networkx: Added (D-Wave Systems network exploration)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-ocean-sdk
|
academic/dwave-ocean-sdk: Fix deps.
|
2022-11-19 10:08:09 +07:00 |
|
dwave-preprocessing
|
academic/dwave-preprocessing: Added (binary quadratic models tools)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-system
|
academic/dwave-system: Added (basic API for D-Wave system)
|
2022-11-12 22:32:59 +07:00 |
|
dwave-tabu
|
academic/dwave-tabu: Added (C/C++ implementation of MST2 for QUBO)
|
2022-11-12 22:32:59 +07:00 |
|
dwavebinarycsp
|
academic/dwavebinarycsp: Added (contruct binary quadratic models)
|
2022-11-12 22:32:58 +07:00 |
|
easy_spice
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ed-v6
|
Daves unified names
|
2023-05-06 08:28:36 +07:00 |
|
edsim51di
|
academic/edsim51di: Update DOWNLOAD to https.
|
2022-03-04 02:48:05 +00:00 |
|
elk
|
academic/elk: Fix SlackBuild permissions.
|
2022-11-12 22:33:05 +07:00 |
|
engauge
|
academic/engauge: Fix build.
|
2024-05-21 10:53:26 +07:00 |
|
ent
|
academic/ent: Use https URLs.
|
2024-03-23 08:17:07 +07:00 |
|
ephem
|
academic/ephem: Added (an astronomy program).
|
2023-08-12 09:46:19 +09:00 |
|
eprover
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
equalx
|
academic/equalx: Update email address.
|
2022-06-08 12:25:40 -04:00 |
|
ess
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
evopedia_qt
|
academic/evopedia_qt: Use qt4.
|
2022-02-27 22:29:05 -06:00 |
|
exonerate
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
extrema
|
academic/extrema: Remove .la files.
|
2022-03-08 09:44:26 +07:00 |
|
fann
|
academic/fann: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
fastqc
|
academic/fastqc: cleanup doinst.sh, info updated
|
2023-09-23 08:31:12 +07:00 |
|
fet
|
academic/fet: Updated for version 6.22.0.
|
2024-06-17 07:27:20 +07:00 |
|
fiji
|
academic/fiji: Updated for version 20230801_1717.
|
2023-09-17 00:10:15 +07:00 |
|
finchtv
|
academic/finchtv: Fix ARCH section.
|
2023-05-20 11:17:56 +07:00 |
|
fityk
|
academic/fityk: Fix redundant deps.
|
2023-12-22 07:59:39 +07:00 |
|
flann
|
academic/flann: Fix building with the newer cmake, cleanups.
|
2022-02-06 15:47:07 +07:00 |
|
flexbar
|
academic/flexbar: incl. patches for newer tbb
|
2023-11-08 00:02:01 +07:00 |
|
free42
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
g3data
|
academic/g3data: Fix DOWNLOAD.
|
2023-09-17 00:10:23 +07:00 |
|
gaiasky
|
academic/gaiasky: Updated for version 3.6.2.
|
2024-06-07 12:00:42 +07:00 |
|
galculator
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
gaw3
|
academic/gaw3: Updated for version 20220315.
|
2023-04-01 09:14:08 +07:00 |
|
gchemutils
|
academic/gchemutils: Fix typo in script.
|
2022-03-09 14:41:35 -05:00 |
|
gcompris-qt
|
academic/gcompris-qt: Updated for version 4.1.
|
2024-05-22 22:29:49 +07:00 |
|
gdstk
|
academic/gdstk: Added (GDSII / OASIS file library).
|
2023-12-09 07:50:06 +07:00 |
|
geda-gaf
|
academic/geda-gaf: Remove .la files.
|
2022-03-08 09:44:26 +07:00 |
|
gelemental
|
academic/gelemental: Updated for version 2.0.2.
|
2023-04-22 11:38:28 +07:00 |
|
gem5
|
academic/gem5: Added (open-source system-level & CPU simulator)
|
2022-10-29 10:28:33 +07:00 |
|
geneconv
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
genius
|
academic/genius: Updated for version 1.0.27.
|
2022-02-27 22:29:05 -06:00 |
|
genometools
|
academic/genometools: Updated for version 1.6.2.
|
2022-09-04 04:51:14 +01:00 |
|
genpak
|
academic/genpak: Fix docs.
|
2022-04-09 15:45:11 +07:00 |
|
geomview
|
academic/geomview: Updated for version 1.9.5.
|
2023-02-04 07:19:52 +07:00 |
|
gephi
|
academic/gephi: Added (Open Graph Viz Platform).
|
2023-07-19 10:00:21 +07:00 |
|
gerbv
|
academic/gerbv: Updated for version 2.10.0.
|
2024-01-08 10:06:20 +07:00 |
|
getdp
|
academic/getdp: Updated for version 3.5.0.
|
2022-08-13 10:40:35 +07:00 |
|
getfem
|
academic/getfem: Fix deps.
|
2022-11-12 22:33:19 +07:00 |
|
ggobi
|
academic/ggobi: Updated for version 2.1.11.
|
2022-03-09 17:20:42 +07:00 |
|
ghemical
|
academic/ghemical: Fix build.
|
2022-02-27 22:29:05 -06:00 |
|
glpk
|
academic/glpk: Remove .la files.
|
2022-03-08 09:44:25 +07:00 |
|
glvis
|
academic/glvis: Added (finite element visualization tool).
|
2022-11-25 14:22:50 +07:00 |
|
gmsh
|
academic/gmsh: Updated for version 4.12.2.
|
2024-02-10 16:17:21 +07:00 |
|
gnucap
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
gp2fasta
|
academic/gp2fasta: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
gplates
|
academic/gplates: Added (plate tectonics program).
|
2024-02-10 16:17:21 +07:00 |
|
gpredict
|
academic/gpredict: Added aarch64 flags
|
2024-01-19 09:51:03 +07:00 |
|
grace
|
academic/grace: Update download url.
|
2022-09-10 15:19:08 +07:00 |
|
gresistor
|
academic/gresistor: Align with template.
|
2023-05-20 11:17:29 +07:00 |
|
gretl
|
academic/gretl: Remove .la files.
|
2022-03-08 09:44:27 +07:00 |
|
gri
|
academic/gri: Updated for version 2.12.7
|
2024-05-11 06:51:48 +07:00 |
|
gromacs
|
academic/gromacs: Minor template nitpick.
|
2023-02-18 10:07:13 +07:00 |
|
grpn
|
academic/grpn: Change i486 to i586
|
2022-06-07 02:23:03 -04:00 |
|
gspiceui
|
academic/gspiceui: Updated for version 1.2.87.
|
2023-06-03 10:38:23 +07:00 |
|
gtkwave
|
academic/gtkwave: Updated for version 3.3.111.
|
2022-02-27 22:29:05 -06:00 |
|
gtypist
|
academic/gtypist: Updated maintainer info.
|
2022-11-18 22:02:50 +07:00 |
|
gwyddion
|
academic/gwyddion: Updated for version 2.66.
|
2024-06-01 12:12:00 +07:00 |
|
h5utils
|
academic/h5utils: Updated for version 1.13.2.
|
2023-02-18 10:06:44 +07:00 |
|
harminv
|
academic/harminv: Updated for version 1.4.2.
|
2023-02-18 10:06:44 +07:00 |
|
hdfview
|
academic/hdfview: Added (visualization and exploration software).
|
2023-11-19 21:08:04 +07:00 |
|
hyphy
|
academic/hyphy: Updated for version 2.5.50.
|
2023-05-13 19:27:12 +07:00 |
|
iTest
|
academic/iTest: Use qt4.
|
2022-02-27 22:29:06 -06:00 |
|
io_lib
|
academic/io_lib: Updated for version 1.15.0.
|
2023-05-13 19:27:04 +07:00 |
|
iqtree
|
academic/iqtree: Updated for version 2.2.2.7.
|
2023-09-13 21:53:07 +07:00 |
|
irsim
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
isoelectric-point
|
academic/isoelectric-point: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
itex2mml
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
jalview
|
academic/jalview: Updated for version 2.11.2.7.
|
2023-09-17 00:10:16 +07:00 |
|
jellyfish_k-mer
|
academic/jellyfish_k-mer: Remove .la files.
|
2022-03-08 09:44:28 +07:00 |
|
jpicedt
|
academic/jpicedt: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
kalign
|
academic/kalign: Added (multipelsquence alignment program).
|
2023-09-11 14:39:00 +07:00 |
|
karma
|
academic/karma: Allow ARCH=i586 in environment.
|
2022-03-20 20:45:13 +07:00 |
|
kissat
|
academic/kissat: Added (SAT solver).
|
2024-04-14 12:05:18 +07:00 |
|
klavaro
|
academic/klavaro: Updated for version 3.14.
|
2022-12-31 09:14:42 +07:00 |
|
klu
|
academic/klu: Fix redundant deps.
|
2023-12-22 07:59:39 +07:00 |
|
knime
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
kraken
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ktikz
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
kurso
|
academic/kurso: x86 is unsupported.
|
2022-03-12 11:30:45 +13:00 |
|
labplot2
|
academic/labplot2: Fix double compilation.
|
2023-08-19 09:15:16 +07:00 |
|
ladr
|
academic/ladr: Wrap README at 72 columns.
|
2022-03-12 14:35:24 -05:00 |
|
laghos
|
academic/laghos: Added (LAGrangian High-Order Solver)
|
2022-12-17 09:13:53 +07:00 |
|
lalnview
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
lammps
|
academic/lammps: Remove doinst.sh.
|
2024-04-17 14:55:21 +07:00 |
|
lapack95
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
lapacke
|
academic/lapacke: Updated for version 3.12.0
|
2024-01-13 07:14:25 +07:00 |
|
latex2html
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ldl
|
academic/ldl: Align with template.
|
2023-05-20 11:17:30 +07:00 |
|
libghemical
|
academic/libghemical: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
locarna
|
academic/locarna: Remove .la files.
|
2022-03-08 09:44:28 +07:00 |
|
louvain-community
|
academic/louvain-community: Fix github URL.
|
2024-04-05 15:18:04 +07:00 |
|
lpsolve
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
mafft
|
academic/mafft: Updated for version 7.520.
|
2023-05-13 19:27:12 +07:00 |
|
magic
|
academic/magic: Updated for version 8.3.474.
|
2024-05-11 06:51:54 +07:00 |
|
mathics
|
academic/mathics: Fix deps.
|
2022-11-12 22:33:12 +07:00 |
|
mathjax2
|
academic/mathjax2: Update maintainer's email
|
2023-06-04 23:13:23 +07:00 |
|
mathomatic
|
academic/mathomatic: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
matio
|
academic/matio: Updated for version 1.5.23.
|
2023-02-11 09:30:46 +07:00 |
|
maxima
|
academic/maxima: Updated for version 5.47.0.
|
2023-07-02 21:01:11 +07:00 |
|
meep
|
academic/meep: Fix redundant deps.
|
2023-12-22 07:59:39 +07:00 |
|
megax
|
academic/megax: Fix and mv ARCH sect.
|
2023-05-20 11:17:56 +07:00 |
|
meme-db-gomo
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
meme-db-motif
|
academic/meme-db-motif: Updated for version 12.23.
|
2022-09-04 04:57:25 +01:00 |
|
meme-db-tgene
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
meme-suite
|
academic/meme-suite: Updated for version 5.5.4.
|
2023-09-13 21:51:25 +07:00 |
|
mendeleydesktop
|
academic/mendeleydesktop: Fix ARCH.
|
2023-06-03 10:38:30 +07:00 |
|
metalwalls
|
academic/metalwalls: Added (Molecular modelling systems).
|
2022-10-19 01:02:36 +07:00 |
|
metis
|
academic/metis: Align with template.
|
2023-05-20 11:17:30 +07:00 |
|
mfem
|
academic/mfem: Added (library for finite element methods).
|
2022-11-20 09:37:41 +07:00 |
|
minorminer
|
academic/minorminer: Added (heuristic tool for minor embedding).
|
2022-11-12 10:48:01 +07:00 |
|
mkDSSP
|
academic/mkDSSP: Updated for version 4.0.3, switch to cmake.
|
2022-02-07 23:04:38 +07:00 |
|
molden
|
academic/molden: Added (Molecular Density Viewer).
|
2024-06-04 19:59:35 +07:00 |
|
molequeue
|
academic/molequeue: Updated for version 0.9.0.
|
2022-04-24 01:47:09 +07:00 |
|
mpb
|
academic/mpb: Remove .la files.
|
2022-03-08 09:44:29 +07:00 |
|
mrbayes
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
mumsa
|
academic/mumsa: Added (A tool to assess MSA quality)
|
2022-09-25 13:59:42 +07:00 |
|
muscle
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
muscle5
|
academic/muscle5: Added (MUSCLE 5: Next-generation MUSCLE)
|
2022-10-15 10:47:28 +07:00 |
|
ncbi-blast
|
academic/ncbi-blast: Fix and mv ARCH sect.
|
2023-05-20 11:17:56 +07:00 |
|
ncbi-blast+
|
academic/ncbi-blast+: Updated for version 2.14.1.
|
2023-09-13 21:52:06 +07:00 |
|
ncbi-edirect
|
academic/ncbi-edirect: Updated for version 20.5.20231007.
|
2023-10-14 10:32:26 +07:00 |
|
ncbi-rmblastn
|
academic/ncbi-rmblastn: Allow ARCH=i586 in environment.
|
2022-03-20 20:45:13 +07:00 |
|
nco
|
academic/nco: Updated for version 5.2.4.
|
2024-04-26 00:45:37 +07:00 |
|
ncview
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
ngspice
|
academic/ngspice: Point the chmod to the correct directory.
|
2024-02-03 08:08:56 +07:00 |
|
novocraft
|
academic/novocraft: files update.
|
2021-10-16 00:19:04 +07:00 |
|
octave
|
academic/octave: Updated for version 8.4.0
|
2024-01-13 07:14:26 +07:00 |
|
openboard
|
academic/openboard: Updated for version 1.7.1.
|
2024-05-11 06:51:57 +07:00 |
|
pal2nal
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
paml
|
academic/paml: Updated for version 4.10.6.
|
2023-04-22 11:38:27 +07:00 |
|
pamlX
|
academic/pamlX: Fix paml docs dir.
|
2023-04-22 11:38:28 +07:00 |
|
papi
|
academic/papi: Updated for version 6.0.0.1.
|
2022-02-27 22:29:06 -06:00 |
|
pari
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
parmetis
|
academic/parmetis: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
patsy
|
academic/patsy: Fix deps.
|
2022-11-12 22:33:12 +07:00 |
|
pcalc
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
pcb
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
penaltymodel
|
academic/penaltymodel: Added (penalty model solver).
|
2022-11-12 10:49:57 +07:00 |
|
perlprimer
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
pianobooster
|
academic/pianobooster: Update email address.
|
2022-06-08 12:25:51 -04:00 |
|
plasmidomics
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
plus42
|
academic/plus42: Updated for version 1.1.12.
|
2024-06-01 00:33:25 +07:00 |
|
pomoxis
|
academic/pomoxis: Added (bioinformatics tools for nanopore research)
|
2023-03-18 09:50:22 +07:00 |
|
prank-msa
|
academic/prank-msa: Added (probabilistic multiple alignment program)
|
2022-09-08 22:18:25 +01:00 |
|
primer3
|
academic/primer3: Updated for version 2.6.1.
|
2023-06-20 19:52:38 +07:00 |
|
pspp
|
academic/pspp: Updated for version 2.0.1.
|
2024-05-04 21:45:16 +07:00 |
|
pulseview
|
academic/pulseview: Updated for version 20220225_4efbe9b.
|
2022-02-27 22:29:06 -06:00 |
|
pyCRAC
|
academic/pyCRAC: Fix redundant deps.
|
2023-12-22 07:59:39 +07:00 |
|
pysam
|
academic/pysam: set to use internal htslib
|
2023-09-23 08:31:12 +07:00 |
|
python2-kiwisolver
|
academic/python2-kiwisolver: Align with template.
|
2023-05-20 11:17:41 +07:00 |
|
python2-scipy
|
academic/python2-scipy: Align with template.
|
2023-05-20 11:17:41 +07:00 |
|
python3-ase
|
academic/python3-ase: Fix redundant deps.
|
2023-12-22 07:59:39 +07:00 |
|
python3-scipy
|
academic/python3-scipy: Fix PYTHONPATH.
|
2024-04-05 15:18:20 +07:00 |
|
qalculate-gtk
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
qcl
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
qhull
|
academic/qhull: Remove outdated octave symlinks.
|
2024-01-16 14:36:14 +07:00 |
|
qrupdate
|
academic/qrupdate: Fix redundant deps.
|
2023-12-22 07:59:40 +07:00 |
|
qucs
|
academic/qucs: Align to template.
|
2022-03-26 11:46:45 +13:00 |
|
qucs-s
|
academic/qucs-s: Updated for version 24.2.1.
|
2024-04-04 11:15:06 +07:00 |
|
ramulator
|
academic/ramulator: Fix github tarball handling.
|
2022-11-26 09:11:46 +07:00 |
|
rbio
|
academic/rbio: Align with template.
|
2023-05-20 11:17:27 +07:00 |
|
reduce-algebra
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
root
|
academic/root: Updated for v6.28.08
|
2023-11-04 16:39:16 +07:00 |
|
rpy2
|
academic/rpy2: Upgrade to version 3.5.16
|
2024-04-15 10:00:33 +07:00 |
|
sage
|
academic/sage: Updated for 10.1
|
2023-09-29 10:35:53 +07:00 |
|
sage-bin
|
academic/sage-bin: Fix .info.
|
2022-05-28 09:11:22 +07:00 |
|
samtools
|
academic/samtools:Upgrade to 1.20
|
2024-05-04 21:45:02 +07:00 |
|
samtools-legacy
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
scidavis
|
academic/scidavis: Fix building on -current.
|
2024-04-13 22:04:05 +07:00 |
|
scilab
|
various: Use zulu jdk builds for REQUIRES.
|
2022-03-03 15:56:51 +07:00 |
|
scmutils
|
academic/scmutils: Added (scm utils).
|
2023-11-29 18:35:27 +07:00 |
|
seaview
|
academic/seaview: treerecs added to REQUIRES.
|
2023-04-22 11:38:31 +07:00 |
|
seqkit
|
academic/seqkit: Updated for version 2.5.1.
|
2023-09-23 08:42:56 +07:00 |
|
sequence-analysis
|
academic/sequence-analysis: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
|
sigrok-cli
|
academic/sigrok-cli: Updated for version 20220222_525f481.
|
2022-03-01 19:35:46 +07:00 |
|
sim
|
academic/sim: Added (local similarity program).
|
2023-09-11 22:18:38 +07:00 |
|
siril
|
academic/siril: Fix VERSION.
|
2022-03-12 11:36:35 +13:00 |
|
smath-studio
|
academic/smath-studio: Updated for version 1.1.8763
|
2024-05-04 21:45:29 +07:00 |
|
snpEff
|
academic/snpEff: Build cleanup.
|
2022-08-13 10:40:38 +07:00 |
|
solfege
|
academic/solfege: Change i486 to i586
|
2022-06-07 02:23:04 -04:00 |
|
spades
|
academic/spades: Updated for version 3.15.5.
|
2023-04-21 09:30:46 +07:00 |
|
speedcrunch
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
spiceopus
|
academic/spiceopus: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
|
spidey
|
academic/spidey: Fix and mv ARCH sect.
|
2023-05-20 11:17:56 +07:00 |
|
spqr
|
academic/spqr: Fix redundant deps.
|
2023-12-22 07:59:40 +07:00 |
|
squizz
|
academic/squizz: Remove .la files.
|
2022-03-08 09:44:29 +07:00 |
|
staden
|
academic/staden: A few enhancements.
|
2023-05-13 19:27:12 +07:00 |
|
stellarium
|
academic/stellarium: Updated for version 23.4.
|
2024-01-09 08:45:39 +07:00 |
|
stellarsolver
|
academic/stellarsolver: Mark for x86_64 only.
|
2024-05-04 21:45:22 +07:00 |
|
stringtie
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
suitesparse
|
academic/suitesparse: Ensure correct linking
|
2023-11-25 22:12:39 +07:00 |
|
suitesparseconfig
|
academic/suitesparseconfig: Align with template.
|
2023-05-20 11:17:30 +07:00 |
|
sundials
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
sword
|
academic/sword: Updated for version 1.9.0.
|
2022-04-16 12:12:42 +07:00 |
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sword-data-kjv
|
academic/sword-data-kjv: Fix install location.
|
2024-01-18 07:53:37 +07:00 |
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t_coffee
|
academic/t_coffee: Updated for version 13.45.58.c355d11.
|
2022-03-01 19:35:46 +07:00 |
|
tabix-legacy
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
tiemu
|
academic/tiemu: New maintainer.
|
2023-02-25 09:18:10 +07:00 |
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tilem
|
academic/tilem: Fix for gcc >= 10.x.
|
2022-03-01 19:35:46 +07:00 |
|
tilem2
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
tkgate
|
academic/tkgate: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
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topdraw
|
academic/topdraw: update source.
|
2023-09-11 22:18:50 +07:00 |
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tophat
|
academic/tophat: Use -std=c++14.
|
2022-03-03 09:38:11 +00:00 |
|
treebest-ensembl
|
academic/treebest-ensembl: Wrap README at 72 columns.
|
2022-03-12 14:40:15 -05:00 |
|
treerecs
|
academic/treerecs: Added (Treerecs: a tree reconciliation tool)
|
2023-04-22 11:38:30 +07:00 |
|
treeviewx
|
academic/treeviewx: update source.
|
2023-09-11 22:18:50 +07:00 |
|
trfind
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
trimmomatic
|
academic/trimmomatic: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
|
tuxmath
|
academic/tuxmath: Rename blits. Remove dupe lan player.
|
2022-03-04 09:46:12 +00:00 |
|
tuxtype2
|
academic/tuxtype2: Change i486 to i586
|
2022-06-07 02:23:05 -04:00 |
|
ucsc-blat
|
academic/ucsc-blat: Fix and mv ARCH sect, http->https.
|
2023-05-20 11:17:56 +07:00 |
|
ugene
|
academic/ugene: Updated for version 48.1.
|
2023-09-17 00:10:15 +07:00 |
|
umfpack
|
academic/umfpack: Fix redundant deps.
|
2023-12-22 07:59:40 +07:00 |
|
units
|
academic/units: Updated for version 2.23.
|
2024-02-24 15:34:49 +07:00 |
|
vCAPS_coevolution
|
academic/vCAPS_coevolution: Added (Coevolution Analysis)
|
2022-09-09 03:10:09 +01:00 |
|
vcftools
|
All: Support $PRINT_PACKAGE_NAME env var
|
2021-07-17 21:55:09 +02:00 |
|
velocyto
|
academic/velocyto: Use correct github URL.
|
2023-03-25 10:02:01 +07:00 |
|
verilator
|
academic/verilator: Make slack-desc ASCII.
|
2022-03-17 12:38:15 -04:00 |
|
verilog
|
academic/verilog: Fix download url.
|
2022-11-05 12:56:05 +07:00 |
|
veusz
|
academic/veusz: Fix deps.
|
2022-11-12 22:33:18 +07:00 |
|
voro++
|
academic/voro++: Added (A 3D Voronoi cell software library)
|
2022-10-15 10:47:38 +07:00 |
|
wcalc
|
academic/wcalc: Use correct sourceforge link.
|
2024-01-27 15:37:51 +07:00 |
|
wehi-cellsymphony
|
academic/wehi-cellsymphony: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
|
wehi-deid
|
academic/wehi-deid: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
|
wehi-hackit
|
academic/wehi-hackit: Use zulu-openjdk11.
|
2022-03-03 15:56:49 +07:00 |
|
wehi-weasel
|
academic/wehi-weasel: Updated for version 3.8.0.18.
|
2023-09-17 00:10:15 +07:00 |
|
wise
|
academic/wise: Update script.
|
2023-09-23 08:42:56 +07:00 |
|
wmcalc
|
academic/wmcalc: Fix doinst.sh.
|
2022-12-31 09:14:48 +07:00 |
|
wxMaxima
|
academic/wxMaxima: Use DESTDIR properly.
|
2023-07-08 16:41:57 +07:00 |
|
x48
|
academic/x48: Fixed MD5SUM.
|
2024-04-14 08:34:30 +07:00 |
|
xcircuit
|
academic/xcircuit: Updated for version 3.10.30. New maintainer.
|
2023-03-25 10:01:45 +07:00 |
|
xephem
|
academic/xephem: Updated for version 4.1.0.
|
2023-08-12 09:42:58 +09:00 |
|
xflr5
|
academic/xflr5: gzip patches.
|
2023-12-29 18:49:32 +07:00 |
|
xfoil
|
academic/xfoil: Updated the patch to fix build.
|
2021-08-14 21:18:00 +07:00 |
|
xiphos
|
academic/xiphos: Update HOMEPAGE.
|
2024-02-16 18:51:22 +07:00 |
|
xoscope
|
academic/xoscope: Align with template.
|
2023-05-20 11:17:31 +07:00 |
|
xschem
|
academic/xschem: Update script.
|
2023-12-06 10:09:31 +07:00 |
|
xsimd
|
academic/xsimd: Updated for version 13.0.0.
|
2024-05-25 11:47:40 +07:00 |
|
yices2
|
academic/yices2: Added (Satisfiability modulo theories solver).
|
2022-11-05 12:46:15 +07:00 |
|
z3
|
academic/z3: Updated for version 4.11.2.
|
2022-10-08 09:12:54 +07:00 |
|
zotero
|
academic/zotero: update 6.0.35
|
2024-03-09 06:18:17 +07:00 |
|
zotero-gtk2
|
academic/zotero-gtk2: Added (Collect and share research sources)
|
2023-05-06 08:28:23 +07:00 |
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