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slackbuilds/academic/pysam
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brobr 8a052f2011
academic/pysam: set to use internal htslib 
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 		2023-09-23 08:31:12 +07:00
..
README academic/pysam: Updated for version 0.13.0. 2018-01-27 07:43:46 +07:00
pysam.SlackBuild academic/pysam: set to use internal htslib 2023-09-23 08:31:12 +07:00
pysam.info academic/pysam: set to use internal htslib 2023-09-23 08:31:12 +07:00
slack-desc academic/pysam: Updated for version 0.14.1. 2018-05-19 00:45:03 +01:00

README 

Pysam is a python module for reading and manipulating files in the
SAM/BAM format. The SAM/BAM format is a way to store efficiently large
numbers of alignments (Li 2009), such as those routinely created by
next-generation sequencing methods.

Pysam is a lightweight wrapper of the samtools_ C-API. Pysam also
includes an interface for tabix.

Reference: Li et al. Bioinformatics. 2009 Aug 15;25(16):2078-9.
doi: 10.1093/bioinformatics/btp352.
The Sequence Alignment/Map format and SAMtools.