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Matteo Bernardini 6bee535e22
academic/fet: Updated for version 6.13.2. 
Self-hosted cause upstream removes every old version
when the new ones are out

Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
 		2023-12-02 07:54:27 +07:00
..
3D-ICE academic/3D-ICE: Added (Thermal Emulator Library). 2022-12-03 11:30:33 +07:00
AlphaPlot academic/AlphaPlot: Added (data analysis and visualization) 2022-04-30 13:51:47 +07:00
CAFS_divergence academic/CAFS_divergence: Fix ARCH section. 2023-05-20 11:17:57 +07:00
CAPS_coevolution academic/CAPS_coevolution: Fix ARCH section. 2023-05-20 11:17:57 +07:00
DRAMPower academic/DRAMPower: Fix github tarball handling. 2022-11-26 09:11:46 +07:00
DRAMSim2 academic/DRAMSim2: Added (A cycle accurate DRAM simulator) 2022-10-15 10:47:28 +07:00
DRAMSys academic/DRAMSys: Fix github tarball handling. 2023-01-07 08:13:28 +07:00
DRAMsim3 academic/DRAMsim3: Fix github tarball handling. 2022-11-05 21:15:16 +07:00
Data2FCS academic/Data2FCS: Use zulu-openjdk11. 2022-03-03 15:56:48 +07:00
DendroPy academic/DendroPy: Updated for version 4.5.1. 2022-09-08 08:11:03 +01:00
EMBASSY academic/EMBASSY: Update binaries location. 2022-07-29 22:21:46 +07:00
EMBOSS academic/EMBOSS: Update binaries location. 2022-07-29 22:20:39 +07:00
FCSalyzer academic/FCSalyzer: Handle url-encoded filenames. 2022-03-05 00:17:45 +13:00
FastTree academic/FastTree: Added (Infers approximately-ML phylogenetic). 2023-09-11 15:05:54 +07:00
FigTree academic/FigTree: Add (A graphical viewer of phylogenetic trees). 2023-09-11 14:31:54 +07:00
FreeFem academic/FreeFem: Fix MD5SUM. 2023-07-08 16:41:49 +07:00
Gabedit academic/Gabedit: Install references. 2022-07-09 10:06:07 +07:00
Gblocks academic/Gblocks: Update script. 2023-09-13 21:34:07 +07:00
GeoGebra academic/GeoGebra: Use zulu-openjdk7. 2022-03-03 15:56:45 +07:00
Gridcoin-Research academic/Gridcoin-Research: Updated for version 5.4.5.0 2023-04-29 18:11:56 +07:00
HMMER academic/HMMER: Updated for version 3.4. 2023-09-13 21:53:45 +07:00
IGV academic/IGV: Updated for version 2.16.2. 2023-09-17 00:10:15 +07:00
ITK academic/ITK: Update the internal patch for gcc 11.x. 2021-08-19 18:33:48 +07:00
Isabelle academic/Isabelle: Added (proof assistant). 2023-07-18 08:47:19 +07:00
Kst academic/Kst: Updated for version 20221025_5fdd819. 2023-02-22 12:09:51 +07:00
MetaPhlAn2 academic/MetaPhlAn2: Fix ARCH and deps. 2022-11-12 22:33:20 +07:00
NWChem academic/NWChem: Added (High-Performance Computational Chemistry) 2022-12-10 07:43:12 +07:00
OpenFOAM academic/OpenFOAM: Updated for version 10. 2022-07-29 22:50:17 +07:00
OpenMM academic/OpenMM: Fix github tarball handling. 2022-11-05 21:15:16 +07:00
OpenVSP academic/OpenVSP: Moved from graphics. Updated for version 3.31.1. 2023-01-21 10:22:03 +07:00
PhyML academic/PhyML: Updated for version 3.3.20220408. 2022-09-04 13:49:57 +01:00
PyAMG academic/PyAMG: Fix deps. 2022-11-12 22:33:11 +07:00
R academic/R: Updated for version 4.3.1. 2023-07-02 23:21:19 +07:00
RAxML All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
RepeatMasker academic/RepeatMasker: Updated for version 4.1.5. 2023-09-17 00:10:17 +07:00
STAR academic/STAR:Upgrade to version 2.7.11a 2023-09-23 08:31:13 +07:00
SU2 academic/SU2: Add network warning to README. 2023-09-23 11:33:27 +07:00
SeqMonk academic/SeqMonk: Updated for version 1.48.1. 2022-08-06 20:16:13 +07:00
Shark All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
SimEng academic/SimEng: Fix github tarball handling. 2022-11-26 09:11:46 +07:00
TreeGraph academic/TreeGraph: Use zulu-openjdk11. 2022-03-03 15:56:48 +07:00
ViennaRNA academic/ViennaRNA: upgrade to version 2.6.4; edit README 2023-10-10 06:34:40 +07:00
WEVOTE All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
WolframEngine academic/WolframEngine: Updated for version 13.3.0. 2023-09-09 10:14:14 +07:00
WordNet academic/WordNet: Change i486 to i586 2022-06-07 02:23:02 -04:00
ZeGrapher All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
abntex academic/abntex: Updated for version 20200715_f0a4d3c. 2022-02-27 22:29:04 -06:00
acl2 academic/acl2: Added (Computational Logic for LiSP). 2023-07-18 09:31:16 +07:00
aenig4 All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
aeskulap academic/aeskulap: Fix shebang. 2022-04-09 15:45:58 +07:00
aline academic/aline: update source. 2023-09-11 22:18:50 +07:00
aliview academic/aliview: Updated for version 1.28. 2022-07-29 21:57:48 +07:00
amd academic/amd: Align with template. 2023-05-20 11:17:28 +07:00
amplicon All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
amplifx academic/amplifx: Fix ARCH section. 2023-05-20 11:17:57 +07:00
antiprism academic/antiprism: Change i486 to i586 2022-06-07 02:23:02 -04:00
archaeopteryx academic/archaeopteryx: Use zulu-openjdk11. 2022-03-03 15:56:50 +07:00
aris academic/aris: New maintainer. Update patch. 2022-08-13 10:40:37 +07:00
arka All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
armadillo academic/armadillo: Fix download URL, doc dir. 2022-04-02 12:27:10 -04:00
arpack academic/arpack: Change i486 to i586 2022-06-07 02:23:02 -04:00
arpack-ng academic/arpack-ng: Updated for version 3.9.0 2023-08-19 09:15:34 +07:00
artha All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
avl All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
avogadroapp academic/avogadroapp: Update README. 2023-11-06 06:10:13 +07:00
avogadrolibs academic/avogadrolibs: Update README. 2023-11-06 06:09:03 +07:00
bcftools academic/bcftools: Upgrade to version 1.18 2023-09-23 08:31:12 +07:00
bedGraphToBigWig academic/bedGraphToBigWig: Strip binary. 2022-04-04 12:54:04 -04:00
bedtools academic/bedtools: Updated for version 2.31.0. 2023-06-20 19:46:04 +07:00
biblesync All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
bibletime academic/bibletime: Update email address. 2022-06-09 13:19:35 -04:00
bibus All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
biopython academic/biopython: Updated for version 1.81. 2023-04-22 11:38:31 +07:00
boinc academic/boinc: Fix rc.boinc variables, remove extraneous characters 2023-05-13 19:27:30 +07:00
bowtie academic/bowtie: Updated for version 1.3.1. 2022-10-15 10:47:26 +07:00
bowtie2 academic/bowtie2: upgrade to version 2.5.2 2023-11-08 00:00:31 +07:00
bowtie2-legacy academic/bowtie2-legacy: Patch source. 2022-03-03 09:38:11 +00:00
bpp-core academic/bpp-core: Added (Bio++ Core Library) 2022-09-08 08:11:03 +01:00
bpp-phyl academic/bpp-phyl: Added (Bio++ Phylogenetic Library) 2022-09-08 08:11:03 +01:00
bpp-phyl-omics academic/bpp-phyl-omics: Added (Bio++ Phylogenetic Omics Library) 2022-09-08 08:11:04 +01:00
bpp-popgen academic/bpp-popgen: Added (Bio++ Population Genetics Library) 2022-09-08 08:11:04 +01:00
bpp-seq academic/bpp-seq: Added (Bio++ Sequence library) 2022-09-08 08:11:03 +01:00
bpp-seq-omics academic/bpp-seq-omics: Added (Bio++ Sequence Omics Library) 2022-09-08 08:11:03 +01:00
bpp1.9-numcalc academic/bpp1.9-numcalc: Added (Bio++ 1.9 NumCalc Library) 2022-09-09 02:55:53 +01:00
bpp1.9-phyl academic/bpp1.9-phyl: Added (Bio++ 1.9 Phyl Library) 2022-09-09 03:07:45 +01:00
bpp1.9-seq academic/bpp1.9-seq: Added (Bio++ 1.9 Seq Library) 2022-09-09 02:58:46 +01:00
bpp1.9-utils academic/bpp1.9-utils: Added (Bio++ 1.9 Utils Library) 2022-09-09 02:53:27 +01:00
bppsuite academic/bppsuite: Added (Bio++ program suite) 2022-09-08 08:11:04 +01:00
btf academic/btf: Align with template. 2023-05-20 11:17:28 +07:00
bwa All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
cadabra2 academic/cadabra2: Updated for version 2.4.5. 2023-11-18 09:03:36 +07:00
calc academic/calc: Updated for version 2.14.1.5. 2023-05-27 08:08:51 +07:00
calcoo various: Use zulu jdk builds for REQUIRES. 2022-03-03 15:56:51 +07:00
camd academic/camd: Align with template. 2023-05-20 11:17:28 +07:00
cap3 academic/cap3: DOWLOAD updated. 2022-08-06 20:16:08 +07:00
cblas academic/cblas: Align with template. 2023-05-20 11:17:28 +07:00
ccolamd academic/ccolamd: Align with template. 2023-05-20 11:17:29 +07:00
cdo academic/cdo: Updated for version 2.3.0. 2023-10-21 17:20:14 +07:00
celestia academic/celestia: Wrap README at 72 columns. 2022-03-12 14:34:16 -05:00
chartgeany All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
chemtool academic/chemtool: Fix build failure with gcc10. 2022-02-21 02:41:03 -06:00
cholmod academic/cholmod: Align with template. 2023-05-20 11:17:29 +07:00
cistrome-CEAS All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
cistrome-MACS academic/cistrome-MACS: update source. 2023-09-11 22:18:50 +07:00
cistrome-conductGO All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
cistrome-extra All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
cistrome-mdseqpos academic/cistrome-mdseqpos: Fix deps. 2022-11-12 22:33:12 +07:00
clark-ugene All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
cld2 All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
clustalo academic/clustalo: Remove .la files. 2022-03-08 09:44:26 +07:00
clustalw All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
clustalx academic/clustalx: Updated to use qmake-qt5. BUILD bumped. 2022-08-06 20:16:07 +07:00
colamd academic/colamd: Align with template. 2023-05-20 11:17:29 +07:00
colin academic/colin: Use template TMP assignment. 2023-05-20 11:17:27 +07:00
convertall academic/convertall: Fix docs. 2022-04-05 12:28:40 -04:00
copasi academic/copasi: Updated for version 4.42.284. 2023-12-02 07:44:12 +07:00
cryptominisat academic/cryptominisat: Updated for version 5.11.3. 2022-10-15 10:47:22 +07:00
csparse academic/csparse: Align with template. 2023-05-20 11:17:29 +07:00
cufflinks academic/cufflinks: Fix info file. 2022-03-12 11:26:42 +13:00
cutadapt All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
cvc4 academic/cvc4: Update dependencies. 2023-12-02 07:54:23 +07:00
cxsparse academic/cxsparse: Align with template. 2023-05-20 11:17:29 +07:00
dakota academic/dakota: Updated for version 6.17.0. 2023-01-28 08:23:05 +07:00
datamash academic/datamash: Updated for version 1.8. 2022-09-04 04:44:58 +01:00
diamond All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
dimod academic/dimod: Added (A shared API for samplers) 2022-11-12 22:32:58 +07:00
ds9 academic/ds9: Updated for version 8.4.1. 2023-02-04 07:19:56 +07:00
dwave-cloud-client academic/dwave-cloud-client: Added (REST interface for D-Wave API) 2022-11-12 22:32:58 +07:00
dwave-greedy academic/dwave-greedy: Added (steepest descent solver for (BQM)) 2022-11-12 22:32:58 +07:00
dwave-hybrid academic/dwave-hybrid: Added (Hybrid Async Decomposition Sampler) 2022-11-12 22:32:59 +07:00
dwave-inspector academic/dwave-inspector: Added (visualize D-Wave structured solver) 2022-11-12 22:32:59 +07:00
dwave-neal academic/dwave-neal: Update DEP. 2023-04-29 09:30:05 +07:00
dwave-networkx academic/dwave-networkx: Added (D-Wave Systems network exploration) 2022-11-12 22:32:59 +07:00
dwave-ocean-sdk academic/dwave-ocean-sdk: Fix deps. 2022-11-19 10:08:09 +07:00
dwave-preprocessing academic/dwave-preprocessing: Added (binary quadratic models tools) 2022-11-12 22:32:59 +07:00
dwave-system academic/dwave-system: Added (basic API for D-Wave system) 2022-11-12 22:32:59 +07:00
dwave-tabu academic/dwave-tabu: Added (C/C++ implementation of MST2 for QUBO) 2022-11-12 22:32:59 +07:00
dwavebinarycsp academic/dwavebinarycsp: Added (contruct binary quadratic models) 2022-11-12 22:32:58 +07:00
easy_spice All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
ed-v6 Daves unified names 2023-05-06 08:28:36 +07:00
edsim51di academic/edsim51di: Update DOWNLOAD to https. 2022-03-04 02:48:05 +00:00
elk academic/elk: Fix SlackBuild permissions. 2022-11-12 22:33:05 +07:00
engauge academic/engauge: Updated for version 12.1. 2022-02-27 22:29:05 -06:00
ent academic/ent: Update email address. 2022-06-08 12:25:40 -04:00
ephem academic/ephem: Added (an astronomy program). 2023-08-12 09:46:19 +09:00
eprover All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
equalx academic/equalx: Update email address. 2022-06-08 12:25:40 -04:00
ess All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
evopedia_qt academic/evopedia_qt: Use qt4. 2022-02-27 22:29:05 -06:00
exonerate All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
extrema academic/extrema: Remove .la files. 2022-03-08 09:44:26 +07:00
fann academic/fann: Change i486 to i586 2022-06-07 02:23:03 -04:00
fastqc academic/fastqc: cleanup doinst.sh, info updated 2023-09-23 08:31:12 +07:00
fet academic/fet: Updated for version 6.13.2. 2023-12-02 07:54:27 +07:00
fiji academic/fiji: Updated for version 20230801_1717. 2023-09-17 00:10:15 +07:00
finchtv academic/finchtv: Fix ARCH section. 2023-05-20 11:17:56 +07:00
fityk academic/fityk: Updated for version 1.3.2. 2023-04-08 09:16:26 +07:00
flann academic/flann: Fix building with the newer cmake, cleanups. 2022-02-06 15:47:07 +07:00
flexbar academic/flexbar: incl. patches for newer tbb 2023-11-08 00:02:01 +07:00
free42 All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
g3data academic/g3data: Fix DOWNLOAD. 2023-09-17 00:10:23 +07:00
gaiasky academic/gaiasky: Updated for version 3.5.7. 2023-11-11 08:07:55 +07:00
galculator All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
gaw3 academic/gaw3: Updated for version 20220315. 2023-04-01 09:14:08 +07:00
gchemutils academic/gchemutils: Fix typo in script. 2022-03-09 14:41:35 -05:00
gcompris-qt academic/gcompris-qt: Updated for version 3.3. 2023-06-10 09:28:37 +07:00
geda-gaf academic/geda-gaf: Remove .la files. 2022-03-08 09:44:26 +07:00
gelemental academic/gelemental: Updated for version 2.0.2. 2023-04-22 11:38:28 +07:00
gem5 academic/gem5: Added (open-source system-level & CPU simulator) 2022-10-29 10:28:33 +07:00
geneconv All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
genius academic/genius: Updated for version 1.0.27. 2022-02-27 22:29:05 -06:00
genometools academic/genometools: Updated for version 1.6.2. 2022-09-04 04:51:14 +01:00
genpak academic/genpak: Fix docs. 2022-04-09 15:45:11 +07:00
geomview academic/geomview: Updated for version 1.9.5. 2023-02-04 07:19:52 +07:00
gephi academic/gephi: Added (Open Graph Viz Platform). 2023-07-19 10:00:21 +07:00
gerbv academic/gerbv: Remove .la files. 2022-03-08 09:44:27 +07:00
getdp academic/getdp: Updated for version 3.5.0. 2022-08-13 10:40:35 +07:00
getfem academic/getfem: Fix deps. 2022-11-12 22:33:19 +07:00
ggobi academic/ggobi: Updated for version 2.1.11. 2022-03-09 17:20:42 +07:00
ghemical academic/ghemical: Fix build. 2022-02-27 22:29:05 -06:00
glpk academic/glpk: Remove .la files. 2022-03-08 09:44:25 +07:00
glvis academic/glvis: Added (finite element visualization tool). 2022-11-25 14:22:50 +07:00
gmsh academic/gmsh: Updated for version 4.11.1. 2023-01-14 08:50:10 +07:00
gnucap All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
gp2fasta academic/gp2fasta: Change i486 to i586 2022-06-07 02:23:03 -04:00
gpredict academic/gpredict: revert to latest stable version 2.2.1 2022-02-24 22:05:13 +07:00
grace academic/grace: Update download url. 2022-09-10 15:19:08 +07:00
gresistor academic/gresistor: Align with template. 2023-05-20 11:17:29 +07:00
gretl academic/gretl: Remove .la files. 2022-03-08 09:44:27 +07:00
gri All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
gromacs academic/gromacs: Minor template nitpick. 2023-02-18 10:07:13 +07:00
grpn academic/grpn: Change i486 to i586 2022-06-07 02:23:03 -04:00
gspiceui academic/gspiceui: Updated for version 1.2.87. 2023-06-03 10:38:23 +07:00
gtkwave academic/gtkwave: Updated for version 3.3.111. 2022-02-27 22:29:05 -06:00
gtypist academic/gtypist: Updated maintainer info. 2022-11-18 22:02:50 +07:00
gwyddion academic/gwyddion: Updated for version 2.64. 2023-11-04 16:39:16 +07:00
h5utils academic/h5utils: Updated for version 1.13.2. 2023-02-18 10:06:44 +07:00
harminv academic/harminv: Updated for version 1.4.2. 2023-02-18 10:06:44 +07:00
hdfview academic/hdfview: Added (visualization and exploration software). 2023-11-19 21:08:04 +07:00
hyphy academic/hyphy: Updated for version 2.5.50. 2023-05-13 19:27:12 +07:00
iTest academic/iTest: Use qt4. 2022-02-27 22:29:06 -06:00
io_lib academic/io_lib: Updated for version 1.15.0. 2023-05-13 19:27:04 +07:00
iqtree academic/iqtree: Updated for version 2.2.2.7. 2023-09-13 21:53:07 +07:00
irsim All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
isoelectric-point academic/isoelectric-point: Change i486 to i586 2022-06-07 02:23:04 -04:00
itex2mml All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
jalview academic/jalview: Updated for version 2.11.2.7. 2023-09-17 00:10:16 +07:00
jellyfish_k-mer academic/jellyfish_k-mer: Remove .la files. 2022-03-08 09:44:28 +07:00
jpicedt academic/jpicedt: Change i486 to i586 2022-06-07 02:23:04 -04:00
jugglinglab various: Use zulu jdk builds for REQUIRES. 2022-03-03 15:56:51 +07:00
kalign academic/kalign: Added (multipelsquence alignment program). 2023-09-11 14:39:00 +07:00
karma academic/karma: Allow ARCH=i586 in environment. 2022-03-20 20:45:13 +07:00
klavaro academic/klavaro: Updated for version 3.14. 2022-12-31 09:14:42 +07:00
klu academic/klu: Align with template. 2023-05-20 11:17:29 +07:00
knime All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
kraken All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
ktikz All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
kurso academic/kurso: x86 is unsupported. 2022-03-12 11:30:45 +13:00
labplot2 academic/labplot2: Fix double compilation. 2023-08-19 09:15:16 +07:00
ladr academic/ladr: Wrap README at 72 columns. 2022-03-12 14:35:24 -05:00
laghos academic/laghos: Added (LAGrangian High-Order Solver) 2022-12-17 09:13:53 +07:00
lalnview All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
lammps academic/lammps: Added (molecular simulator). 2023-09-03 09:37:13 +07:00
lapack95 All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
lapacke academic/lapacke: Align with template. 2023-05-20 11:17:30 +07:00
latex2html All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
ldl academic/ldl: Align with template. 2023-05-20 11:17:30 +07:00
libghemical academic/libghemical: Change i486 to i586 2022-06-07 02:23:04 -04:00
link-grammar academic/link-grammar: Change i486 to i586 2022-06-07 02:23:04 -04:00
locarna academic/locarna: Remove .la files. 2022-03-08 09:44:28 +07:00
lpsolve All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
mafft academic/mafft: Updated for version 7.520. 2023-05-13 19:27:12 +07:00
magic All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
mathics academic/mathics: Fix deps. 2022-11-12 22:33:12 +07:00
mathjax2 academic/mathjax2: Update maintainer's email 2023-06-04 23:13:23 +07:00
mathomatic academic/mathomatic: Change i486 to i586 2022-06-07 02:23:04 -04:00
matio academic/matio: Updated for version 1.5.23. 2023-02-11 09:30:46 +07:00
maxima academic/maxima: Updated for version 5.47.0. 2023-07-02 21:01:11 +07:00
meep academic/meep: Fix 32bit build. 2023-07-22 15:52:46 +07:00
megax academic/megax: Fix and mv ARCH sect. 2023-05-20 11:17:56 +07:00
meme-db-gomo All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
meme-db-motif academic/meme-db-motif: Updated for version 12.23. 2022-09-04 04:57:25 +01:00
meme-db-tgene All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
meme-suite academic/meme-suite: Updated for version 5.5.4. 2023-09-13 21:51:25 +07:00
mendeleydesktop academic/mendeleydesktop: Fix ARCH. 2023-06-03 10:38:30 +07:00
metalwalls academic/metalwalls: Added (Molecular modelling systems). 2022-10-19 01:02:36 +07:00
metis academic/metis: Align with template. 2023-05-20 11:17:30 +07:00
mfem academic/mfem: Added (library for finite element methods). 2022-11-20 09:37:41 +07:00
minorminer academic/minorminer: Added (heuristic tool for minor embedding). 2022-11-12 10:48:01 +07:00
mkDSSP academic/mkDSSP: Updated for version 4.0.3, switch to cmake. 2022-02-07 23:04:38 +07:00
molequeue academic/molequeue: Updated for version 0.9.0. 2022-04-24 01:47:09 +07:00
mpb academic/mpb: Remove .la files. 2022-03-08 09:44:29 +07:00
mrbayes All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
mumsa academic/mumsa: Added (A tool to assess MSA quality) 2022-09-25 13:59:42 +07:00
muscle All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
muscle5 academic/muscle5: Added (MUSCLE 5: Next-generation MUSCLE) 2022-10-15 10:47:28 +07:00
ncbi-blast academic/ncbi-blast: Fix and mv ARCH sect. 2023-05-20 11:17:56 +07:00
ncbi-blast+ academic/ncbi-blast+: Updated for version 2.14.1. 2023-09-13 21:52:06 +07:00
ncbi-edirect academic/ncbi-edirect: Updated for version 20.5.20231007. 2023-10-14 10:32:26 +07:00
ncbi-rmblastn academic/ncbi-rmblastn: Allow ARCH=i586 in environment. 2022-03-20 20:45:13 +07:00
nco academic/nco: Updated for version 5.1.9. 2023-11-11 08:08:33 +07:00
ncview All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
ngspice academic/ngspice: Updated for version 41. 2023-08-19 09:15:20 +07:00
novocraft academic/novocraft: files update. 2021-10-16 00:19:04 +07:00
octave academic/octave: Updated for version 8.3.0 2023-08-19 09:15:33 +07:00
openboard academic/openboard: Fix build with newer ffmpeg. 2022-10-13 10:19:15 +07:00
pal2nal All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
paml academic/paml: Updated for version 4.10.6. 2023-04-22 11:38:27 +07:00
pamlX academic/pamlX: Fix paml docs dir. 2023-04-22 11:38:28 +07:00
papi academic/papi: Updated for version 6.0.0.1. 2022-02-27 22:29:06 -06:00
pari All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
parmetis academic/parmetis: Change i486 to i586 2022-06-07 02:23:04 -04:00
patsy academic/patsy: Fix deps. 2022-11-12 22:33:12 +07:00
pcalc All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
pcb All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
penaltymodel academic/penaltymodel: Added (penalty model solver). 2022-11-12 10:49:57 +07:00
perlprimer All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
pianobooster academic/pianobooster: Update email address. 2022-06-08 12:25:51 -04:00
plasmidomics All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
plus42 academic/plus42: Updated for version 1.0.21. 2023-08-26 19:07:00 +07:00
pomoxis academic/pomoxis: Added (bioinformatics tools for nanopore research) 2023-03-18 09:50:22 +07:00
prank-msa academic/prank-msa: Added (probabilistic multiple alignment program) 2022-09-08 22:18:25 +01:00
primer3 academic/primer3: Updated for version 2.6.1. 2023-06-20 19:52:38 +07:00
pspp academic/pspp: Updated for version 1.6.2. 2023-03-04 07:16:37 +07:00
pulseview academic/pulseview: Updated for version 20220225_4efbe9b. 2022-02-27 22:29:06 -06:00
pyCRAC academic/pyCRAC: Updated to version 1.5.2; crac_pipeline no longer included (see README) 2023-04-15 06:41:28 +07:00
pyfits academic/pyfits: Align with template. 2023-05-20 11:17:27 +07:00
pysam academic/pysam: set to use internal htslib 2023-09-23 08:31:12 +07:00
python2-kiwisolver academic/python2-kiwisolver: Align with template. 2023-05-20 11:17:41 +07:00
python2-scipy academic/python2-scipy: Align with template. 2023-05-20 11:17:41 +07:00
python3-ase academic/python3-ase: Added (Atomic Simulation Environment (ASE)) 2022-12-10 07:43:12 +07:00
python3-scipy academic/python3-scipy: Fix dep. 2023-10-20 15:43:06 +07:00
qalculate-gtk All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
qcl All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
qhull academic/qhull: Updated for version 8.0.2. 2023-12-01 08:55:49 +07:00
qrupdate academic/qrupdate: Align with template. 2023-05-20 11:17:30 +07:00
qucs academic/qucs: Align to template. 2022-03-26 11:46:45 +13:00
qucs-s academic/qucs-s: Updated for version 2.1.0. 2023-10-28 09:21:03 +07:00
ramulator academic/ramulator: Fix github tarball handling. 2022-11-26 09:11:46 +07:00
rbio academic/rbio: Align with template. 2023-05-20 11:17:27 +07:00
reduce-algebra All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
root academic/root: Updated for v6.28.08 2023-11-04 16:39:16 +07:00
rpy2 academic/rpy2: Upgrade to version 3.5.14 2023-09-23 08:31:12 +07:00
sage academic/sage: Updated for 10.1 2023-09-29 10:35:53 +07:00
sage-bin academic/sage-bin: Fix .info. 2022-05-28 09:11:22 +07:00
samtools academic/samtools: Upgrade to version 1.18 2023-09-23 08:31:12 +07:00
samtools-legacy All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
scidavis academic/scidavis: Updated for version 2.9.0. 2022-06-18 09:09:57 +07:00
scilab various: Use zulu jdk builds for REQUIRES. 2022-03-03 15:56:51 +07:00
scmutils academic/scmutils: Added (scm utils). 2023-11-29 18:35:27 +07:00
seaview academic/seaview: treerecs added to REQUIRES. 2023-04-22 11:38:31 +07:00
seqkit academic/seqkit: Updated for version 2.5.1. 2023-09-23 08:42:56 +07:00
sequence-analysis academic/sequence-analysis: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
sigrok-cli academic/sigrok-cli: Updated for version 20220222_525f481. 2022-03-01 19:35:46 +07:00
sim academic/sim: Added (local similarity program). 2023-09-11 22:18:38 +07:00
siril academic/siril: Fix VERSION. 2022-03-12 11:36:35 +13:00
smath-studio academic/smath-studio: Updated for version 1.0.8348 2022-12-03 11:46:53 +07:00
snpEff academic/snpEff: Build cleanup. 2022-08-13 10:40:38 +07:00
solfege academic/solfege: Change i486 to i586 2022-06-07 02:23:04 -04:00
spades academic/spades: Updated for version 3.15.5. 2023-04-21 09:30:46 +07:00
speedcrunch All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
spiceopus academic/spiceopus: Change i486 to i586 2022-06-07 02:23:05 -04:00
spidey academic/spidey: Fix and mv ARCH sect. 2023-05-20 11:17:56 +07:00
spqr academic/spqr: Disable tbb integration 2023-11-11 08:08:42 +07:00
squizz academic/squizz: Remove .la files. 2022-03-08 09:44:29 +07:00
staden academic/staden: A few enhancements. 2023-05-13 19:27:12 +07:00
stellarium academic/stellarium: Updated for version 23.1. 2023-05-06 08:28:22 +07:00
stellarsolver academic/stellarsolver: Added (Astrometric Plate Solver) 2022-08-20 10:06:38 +07:00
stringtie All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
suitesparse academic/suitesparse: Ensure correct linking 2023-11-25 22:12:39 +07:00
suitesparseconfig academic/suitesparseconfig: Align with template. 2023-05-20 11:17:30 +07:00
sundials All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
sword academic/sword: Updated for version 1.9.0. 2022-04-16 12:12:42 +07:00
sword-data-kjv academic/sword-data-kjv: Updated for version 1.9.0_2. 2023-07-29 08:13:30 +07:00
t_coffee academic/t_coffee: Updated for version 13.45.58.c355d11. 2022-03-01 19:35:46 +07:00
tabix-legacy All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
tiemu academic/tiemu: New maintainer. 2023-02-25 09:18:10 +07:00
tilem academic/tilem: Fix for gcc >= 10.x. 2022-03-01 19:35:46 +07:00
tilem2 All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
tkgate academic/tkgate: Change i486 to i586 2022-06-07 02:23:05 -04:00
topdraw academic/topdraw: update source. 2023-09-11 22:18:50 +07:00
tophat academic/tophat: Use -std=c++14. 2022-03-03 09:38:11 +00:00
treebest-ensembl academic/treebest-ensembl: Wrap README at 72 columns. 2022-03-12 14:40:15 -05:00
treerecs academic/treerecs: Added (Treerecs: a tree reconciliation tool) 2023-04-22 11:38:30 +07:00
treeviewx academic/treeviewx: update source. 2023-09-11 22:18:50 +07:00
trfind All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
trimmomatic academic/trimmomatic: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
tuxmath academic/tuxmath: Rename blits. Remove dupe lan player. 2022-03-04 09:46:12 +00:00
tuxtype2 academic/tuxtype2: Change i486 to i586 2022-06-07 02:23:05 -04:00
ucsc-blat academic/ucsc-blat: Fix and mv ARCH sect, http->https. 2023-05-20 11:17:56 +07:00
ugene academic/ugene: Updated for version 48.1. 2023-09-17 00:10:15 +07:00
umfpack academic/umfpack: Align with template. 2023-05-20 11:17:31 +07:00
units academic/units: Fix paths and run install-info 2023-08-05 10:08:41 +07:00
vCAPS_coevolution academic/vCAPS_coevolution: Added (Coevolution Analysis) 2022-09-09 03:10:09 +01:00
vcftools All: Support $PRINT_PACKAGE_NAME env var 2021-07-17 21:55:09 +02:00
velocyto academic/velocyto: Use correct github URL. 2023-03-25 10:02:01 +07:00
verilator academic/verilator: Make slack-desc ASCII. 2022-03-17 12:38:15 -04:00
verilog academic/verilog: Fix download url. 2022-11-05 12:56:05 +07:00
veusz academic/veusz: Fix deps. 2022-11-12 22:33:18 +07:00
voro++ academic/voro++: Added (A 3D Voronoi cell software library) 2022-10-15 10:47:38 +07:00
wehi-cellsymphony academic/wehi-cellsymphony: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
wehi-deid academic/wehi-deid: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
wehi-hackit academic/wehi-hackit: Use zulu-openjdk11. 2022-03-03 15:56:49 +07:00
wehi-weasel academic/wehi-weasel: Updated for version 3.8.0.18. 2023-09-17 00:10:15 +07:00
wise academic/wise: Update script. 2023-09-23 08:42:56 +07:00
wmcalc academic/wmcalc: Fix doinst.sh. 2022-12-31 09:14:48 +07:00
wxMaxima academic/wxMaxima: Use DESTDIR properly. 2023-07-08 16:41:57 +07:00
x48 academic/x48: Added (HP48 Calculator emulator) 2022-04-30 13:51:49 +07:00
xcircuit academic/xcircuit: Updated for version 3.10.30. New maintainer. 2023-03-25 10:01:45 +07:00
xephem academic/xephem: Updated for version 4.1.0. 2023-08-12 09:42:58 +09:00
xflr5 academic/xflr5: Updated for version 6.54. 2022-04-16 12:12:52 +07:00
xfoil academic/xfoil: Updated the patch to fix build. 2021-08-14 21:18:00 +07:00
xiphos academic/xiphos: Update DEP. 2023-02-25 08:54:00 +07:00
xoscope academic/xoscope: Align with template. 2023-05-20 11:17:31 +07:00
xschem academic/xschem: Added (schematic capture program). 2023-11-21 11:31:39 +07:00
xsimd academic/xsimd: Correct email and clean up SlackBuild 2023-09-23 10:59:55 +07:00
yices2 academic/yices2: Added (Satisfiability modulo theories solver). 2022-11-05 12:46:15 +07:00
z3 academic/z3: Updated for version 4.11.2. 2022-10-08 09:12:54 +07:00
zotero academic/zotero: Updated for version 6.0.26. 2023-05-06 08:28:18 +07:00
zotero-gtk2 academic/zotero-gtk2: Added (Collect and share research sources) 2023-05-06 08:28:23 +07:00