SPAdes: a single-cell genome assembler
SPAdes (St. Petersburg genome assembler) is intended for both standard
isolates and single-cell MDA bacteria assemblies.
SPAdes generates single-cell assemblies, providing information about
genomes of uncultivatable bacteria that vastly exceeds what may be
obtained via traditional metagenomics studies.
Citing:
Nurk S et al. Assembling Single-Cell Genomes and Mini-Metagenomes From
Chimeric MDA Products. Journal of Computational Biology 20(10) (2013),
714-737. doi:10.1089/cmb.2013.0084
NOTE: This will not build on a 32bit system.
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