41 lines
1.8 KiB
Plaintext
41 lines
1.8 KiB
Plaintext
Fiji: Fiji is just ImageJ
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Fiji is an image processing package, a "batteries-included"
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distribution of ImageJ, bundling a lot of plugins which facilitate
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scientific image analysis.
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ImageJ is a Java image processing program inspired by NIH Image for
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the Macintosh. It can display, edit, analyze, process, save and print
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8-bit, 16-bit and 32-bit images. It can read many image formats
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including TIFF, GIF, JPEG, BMP, DICOM, FITS and "raw". It supports
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"stacks", a series of images that share a single window. It is multi-
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threaded, so time-consuming operations such as image file reading can
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be performed in parallel with other operations.
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ImageJ can calculate area and pixel value statistics of user-defined
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selections. It can measure distances and angles. It can create density
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histograms and line profile plots. It supports standard image
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processing functions such as contrast manipulation, sharpening,
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smoothing, edge detection and median filtering.
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ImageJ does geometric transformations such as scaling, rotation and
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flips. Image can be zoomed up to 32:1 and down to 1:32. All analysis
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and processing functions are available at any magnification factor.
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The program supports any number of windows (images) simultaneously,
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limited only by available memory.
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Spatial calibration is available to provide real world dimensional
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measurements in units such as millimeters. Density or gray scale
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calibration is also available.
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Fiji is Just ImageJ, with extras. It is a distribution of ImageJ with
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many plugins useful for scientific image analysis in fields such as
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life sciences. It is actively maintained, with updates released often.
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NOTE: This comes with its own Java environment.
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Citing
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Schindelin, J.; Arganda-Carreras, I. & Frise, E. et al. (2012)
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"Fiji: an open-source platform for biological-image analysis"
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Nature methods 9(7): 676-682, PMID 22743772, doi:10.1038/nmeth.2019
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