Commit Graph

1179 Commits

Author SHA1 Message Date
Kyle Guinn 2783a26a39 academic/metis: Fix potential linking problems.
_LARGEFILE64_SOURCE should be unnecessary.  _FILE_OFFSET_BITS=64
does the real work to link to the 64-bit functions.

Don't abuse libtool's -version-info to make the library version
match the package version.  These do not necessarily correspond.

Remove the .la files; these are causing libtool to overlink.  This
should save you from needlessly rebuilding some dependent packages
in the future.

Signed-off-by: Kyle Guinn <elyk03@gmail.com>
2015-06-14 07:55:32 +07:00
Kyle Guinn 0008ce81ce academic/arpack-ng: Updated for version 3.2.0.
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
2015-06-14 07:55:31 +07:00
Daniil Bratashov f5432c423d academic/wxmacmolplt: Updated for version 7.6.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-06-10 04:39:58 +07:00
R. S. Ananda Murthy d74f6386b6 academic/GeoGebra: Updated for version 5.0.124.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-06-10 04:39:47 +07:00
Matteo Bernardini 6bb032be51 academic/GeoGebra: Fixed download link.
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
2015-06-07 22:10:07 +07:00
Glenn Becker ef9ca32e17 academic/mendeleydesktop: Updated for version 1.13.8.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-06-07 21:42:16 +07:00
Glenn Becker eaa47cffe8 academic/maxima: Updated for version 5.36.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-06-07 21:40:07 +07:00
R.S.Ananda Murthy 88f4189720 academic/fet: Updated for version 5.27.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-05-31 10:36:26 +07:00
Daniil Bratashov 77597c7c8a academic/gwyddion: Updated for version 2.41.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-05-31 10:36:17 +07:00
melikamp 616d180343 academic/R: Updated for version 3.2.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-05-20 21:26:04 +07:00
Willy Sudiarto Raharjo b0592b0735 academic/sage: Updated for version 6.7.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-05-19 12:44:59 +07:00
Tim Dickson d48ed5a261 academic/xiphos: Fix typo.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-05-17 06:45:18 +07:00
Fridrich von Stauffenberg 79ab84b9db academic/scilab: Updated for version 5.5.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-05-16 08:50:56 +07:00
Fellype do Nascimento eebea12125 academic/veusz: Updated for version 1.23.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-05-13 23:07:40 +07:00
R.S.Ananda Murthy d3ef6b11fd academic/fet: Updated for version 5.27.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-30 17:15:44 +07:00
Willy Sudiarto Raharjo 7d37793b76 academic/sword: Update EMAIL.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-25 04:00:12 +07:00
Tim Dickson 88292126ee academic/xiphos: Updated for version 4.0.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-24 23:20:33 +07:00
R. S. Ananda Murthy 8824b75b03 academic/gretl: Updated for version 1.10.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-24 23:10:35 +07:00
R. S. Ananda Murthy eace351b01 academic/Mnemosyne: Updated for version 2.3.3.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-24 18:19:11 +07:00
R. S. Ananda Murthy dfd03895d3 academic/GeoGebra: Updated for version 5.0.82.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-24 18:17:28 +07:00
Willy Sudiarto Raharjo 8cd4a335ad academic/sage: Update README.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-17 00:38:47 +07:00
Glenn Becker 3a3f813349 academic/maxima: commented out gzip of info file.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-17 00:38:46 +07:00
Ryan P.C. McQuen 081514ca22 academic/glpk: Updated for version 4.55.
Signed-off-by: Ryan P.C. McQuen <ryan.q@linux.com>
2015-04-12 10:07:04 +07:00
R. S. Ananda Murthy 97076984a0 academic/omlibraries: Updated for version svn20150410.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 22:41:11 +07:00
R. S. Ananda Murthy de163eb822 academic/openmodelica: Updated for version svn25500.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 22:40:29 +07:00
Petar Petrov d700c3eee3 academic/finchtv: Added (Brilliant Trace Viewer).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 22:39:24 +07:00
Petar Petrov fefd38f6b4 academic/zotero: Updated for version 4.0.26.3.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:29:41 +07:00
Petar Petrov a92a15cd13 academic/tophat: Updated for version 2.0.14.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:29:02 +07:00
Petar Petrov 4593278358 academic/snpEff: Updated for version 4.1c.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:28:24 +07:00
Petar Petrov 92c071ede3 academic/pamlX: Updated for version 1.3.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:27:43 +07:00
Petar Petrov 0119205e38 academic/paml: Fixed CHECKSUM.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:27:02 +07:00
Petar Petrov ae1847ce2a academic/mafft: Updated for version 7.220.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:26:14 +07:00
Petar Petrov 49488459de academic/ij-plugins-LOCI: Updated for version 5.1.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:25:31 +07:00
Petar Petrov 12e0f34760 academic/genometools: Updated for version 1.5.5.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:24:41 +07:00
Petar Petrov 465af7bca3 academic/fastqc: Updated for version 0.11.3.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:23:57 +07:00
Petar Petrov 10195076aa academic/cutadapt: Updated for version 1.8.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:22:46 +07:00
Petar Petrov 04b98e22e3 academic/bedtools: Updated for version 2.23.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:21:23 +07:00
Petar Petrov 3f5f2cea71 academic/aline: Add option to change row length.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-11 18:20:35 +07:00
Tim Dickson 08f6a82a7a academic/xiphos: Fix source.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-07 21:25:23 +07:00
R.S.Ananda Murthy f62f19ede4 academic/fet: Updated for version 5.26.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-07 19:57:02 +07:00
Benjamin Trigona-Harany 02bb880349 academic/cld2: Fix md5sum.
Signed-off-by: Benjamin Trigona-Harany <bosth@alumni.sfu.ca>
2015-04-05 08:38:28 +07:00
Tim Dickson 5b7d255b27 academic/biblesync: Added (Bible Software Navigation Library).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-03 20:50:28 +07:00
Tim Dickson 8c507d6258 academic/xiphos: Added (A bible study application).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-04-03 20:50:02 +07:00
Tim Dickson c43faaa585 academic/bibletime: Updated for version 2.10.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-28 02:22:09 +07:00
Tim Dickson 6b3552d817 academic/sword: Updated for version 1.7.4.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-28 02:22:09 +07:00
Tim Dickson 2148eccd8a academic/sword-data-kjv: Added (King James Version Bible).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-28 02:22:08 +07:00
R. S. Ananda Murthy 6d787f0176 academic/GeoGebra: Updated for version 5.0.80.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-28 02:22:08 +07:00
Petar Petrov 98b0b1410b academic/zotero: Updated for version 4.0.26.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-27 15:29:16 +07:00
Petar Petrov 8128156941 academic/ugene: Updated for version 1.16.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-27 15:28:40 +07:00
Petar Petrov 3f04be71a0 academic/spades: Added (SPAdes Genome Assembler).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-27 15:27:52 +07:00
Petar Petrov 4dec57226a academic/snpEff: Added (Genes toolbox).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-27 08:23:46 +07:00
Petar Petrov c58570189a academic/seaview: Updated for version 4.5.4.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-27 07:58:54 +07:00
Petar Petrov 25b5e0f230 academic/fastqc: Added (quality control tool).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-27 07:57:59 +07:00
Petar Petrov b58f460047 academic/cutadapt: Added (Trim adapters).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-27 07:54:43 +07:00
Willy Sudiarto Raharjo 5abf9d2a76 academic/spatialite_gui: Removed APPROVED line.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-22 15:51:29 +07:00
Panagiotis Nikolaou e9ad9ab3c9 academic/squizz: Fix MD5SUM.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-16 01:32:30 +07:00
Alexander Bruy 6f2e715c34 academic/TauDEM: Updated for version 5.2.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-16 00:09:22 +07:00
Alexander Bruy 080ea62570 academic/PyAMG: Added (Algebraic Multigrid Library).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-15 23:32:08 +07:00
Alexander Bruy cd28d017d3 academic/spatialite_gui: Added (GUI for SpatiaLite).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-15 09:23:39 +07:00
Alexander Bruy 12d22d1945 academic/spatialite-tools: Updated for version 4.2.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-15 09:15:19 +07:00
R. S. Ananda Murthy db80bc979d academic/Mnemosyne: Updated for version 2.3.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-15 07:34:46 +07:00
R. S. Ananda Murthy 72f4265222 academic/GeoGebra: Updated for version 5.0.72.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-14 16:44:28 +07:00
Charles E. Kauffman 6d204a3c37 academic/equalx: Added (equation editor).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-12 22:28:03 +07:00
R. S. Ananda Murthy f28d9a818c academic/GeoGebra: Updated for version 5.0.68.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-03 07:26:17 +07:00
R.S.Ananda Murthy b6193084ea academic/fet: Updated for version 5.26.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-03-01 11:50:50 +07:00
Thiago Nascimento 27d4a7b86a academic/armadillo: Added (C++ linear algebra library).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-28 11:16:30 +07:00
Willy Sudiarto Raharjo a5c54619cd academic/gcompris: Updated for version 15.02.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-24 16:56:34 +07:00
R. S. Ananda Murthy a8195ca862 academic/omlibraries: Updated for version svn20150221.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-24 06:34:43 +07:00
R. S. Ananda Murthy b96ae94ba1 academic/openmodelica: Updated for version svn24695.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-24 06:33:36 +07:00
Kyle Guinn a5e1c5c82a academic/xoscope: Updated for version 2.1.
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
2015-02-21 09:03:58 +07:00
Willy Sudiarto Raharjo 2b9473f833 academic/sage: Updated for version 6.5.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-19 18:22:48 +07:00
R. S. Ananda Murthy 4c9b811268 academic/patsy: Added (statistical models).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-14 15:46:11 +07:00
R. S. Ananda Murthy 0777fb3368 academic/Mnemosyne: Updated for version 2.3.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-11 18:57:34 +07:00
R. S. Ananda Murthy d3ab987da7 academic/GeoGebra: Updated for version 5.0.62.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-09 21:21:47 +07:00
Daniil Bratashov 1c7550c1a0 academic/gwyddion: Updated for version 2.40.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-09 00:14:57 +07:00
Petar Petrov 19d870803c academic/seaview: Updated for version 4.5.3.4.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:47:44 +07:00
Petar Petrov ad590dfd87 academic/zotero: Updated for version 4.0.25.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:10 +07:00
Petar Petrov ab23379524 academic/vcftools: Updated for version 0.1.12b.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:09 +07:00
Petar Petrov 7b29b771ab academic/ugene: Updated for version 1.15.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:09 +07:00
Petar Petrov a2cdd781cc academic/tophat: Updated for version 2.0.13.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:09 +07:00
Petar Petrov c7b5f68ad5 academic/staden: Fix build against tklib 0.6.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:08 +07:00
Petar Petrov f5d420b2c1 academic/spidey: Added x86_64 source.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:08 +07:00
Petar Petrov f19056b3ef academic/paml: Fixed MD5SUM.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:08 +07:00
Petar Petrov b0e1f1a99e academic/ncbi-blast-plus: Updated for version 2.2.30.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:07 +07:00
Petar Petrov 4825ef51fc academic/mrbayes: Updated for version 3.2.4.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:07 +07:00
Petar Petrov 24bdcd7dda academic/mafft: Updated for version 7.215.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:06 +07:00
Petar Petrov 36c8becab8 academic/jalview: Updated for version 2.8.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:06 +07:00
Petar Petrov dadca948a1 academic/ij-plugins-LOCI: Updated for version 5.0.6.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:06 +07:00
Petar Petrov 4c948ac76a academic/genometools: Updated for version 1.5.4.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:05 +07:00
Petar Petrov db4d842e11 academic/gchemutils: Updated for version 0.14.10.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:05 +07:00
Petar Petrov d73dde8e0b academic/bwa: Updated for version 0.7.12.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:05 +07:00
Petar Petrov 583aff01e1 academic/bedtools: Updated for version 2.22.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:04 +07:00
Petar Petrov c8bd220ce2 academic/archeopteryx: Updated for version 0.9901_beta.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-05 06:31:04 +07:00
R.S.Ananda Murthy 3102946105 academic/fet: Updated for version 5.26.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-02 00:56:40 +07:00
R. S. Ananda Murthy 05b64be021 academic/omlibraries: Updated for version svn20150131.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-01 23:55:43 +07:00
R. S. Ananda Murthy 8ca414d177 academic/openmodelica: Updated for version svn24350.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-02-01 23:41:18 +07:00
Willy Sudiarto Raharjo 4f2278d2ff academic/stellarium: Updated for version 0.13.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-01-23 06:35:38 +07:00
ArTourter d06b0951c1 academic/units: Updated for version 2.11.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-01-06 23:02:47 +07:00
Willy Sudiarto Raharjo 571e673501 academic/qrupdate: Fix doc permission.
Thanks to Marco Maggi for the bug report.

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2015-01-01 15:58:08 +07:00
Willy Sudiarto Raharjo f5195408e3 academic/stellarium: Updated for version 0.13.1.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2014-12-30 06:52:22 +07:00