Commit Graph

3578 Commits

Author SHA1 Message Date
Edward W. Koenig 2d5be414ac
academic/boinc: Fix rc.boinc variables, remove extraneous characters
Signed-off-by: Edward W. Koenig <kingbeowulf@linuxgalaxy.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-13 19:27:30 +07:00
Petar Petrov 555dbc00b3
academic/staden: A few enhancements.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-13 19:27:12 +07:00
Petar Petrov 26da2395a3
academic/hyphy: Updated for version 2.5.50.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-13 19:27:12 +07:00
Petar Petrov bfcae61568
academic/mafft: Updated for version 7.520.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-13 19:27:12 +07:00
Petar Petrov b6e96728b9
academic/meme-suite: Updated for version 5.5.2.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-13 19:27:11 +07:00
Petar Petrov 3884b9e473
academic/io_lib: Updated for version 1.15.0.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-13 19:27:04 +07:00
root e95076c776
Daves unified names
"Dave/David" changed to "D"

M  academic/ed-v6/ed-v6.info
M  audio/aacplusenc/aacplusenc.info
M  audio/alsaequal/alsaequal.info
M  audio/audioconvert/audioconvert.info
M  audio/hydrogen/hydrogen.info
M  audio/lash/lash.info
M  audio/nas/nas.info
M  audio/portmidi/portmidi.info
M  audio/retrovol/retrovol.info
M  audio/tta/tta.info
M  audio/xcfa/xcfa.info
M  audio/xforge/xforge.info
M  desktop/catfish/catfish.info
M  desktop/dwm/dwm.info
M  desktop/grun/grun.info
M  desktop/tty-clock/tty-clock.info
M  desktop/wmii/wmii.info
M  desktop/xonclock/xonclock.info
M  development/pudb/pudb.info
M  development/shed/shed.info
M  graphics/fontforge/fontforge.info
M  libraries/libAfterImage/libAfterImage.info
M  libraries/libilbc/libilbc.info
M  libraries/libinklevel/libinklevel.info
M  libraries/libxlsxwriter/libxlsxwriter.info
M  libraries/nspluginwrapper/nspluginwrapper.info
M  libraries/pyPEG2/pyPEG2.info
M  libraries/python2-PyYAML/python2-PyYAML.info
M  libraries/python3-PyQtWebEngine/python3-PyQtWebEngine.info
M  misc/figlet/figlet.info
M  multimedia/AtomicParsley/AtomicParsley.info
M  multimedia/farsight2/farsight2.info
M  network/atheme/atheme.info
M  network/elinks/elinks.info
M  network/felinks/felinks.info
M  network/gofiche/gofiche.info
M  network/js185/js185.info
M  network/milter-greylist/milter-greylist.info
M  network/msmtp/msmtp.info
M  network/nweb/nweb.info
M  network/oinkmaster/oinkmaster.info
M  network/persepolis/persepolis.info
M  network/proxychains/proxychains.info
M  network/psi-plus/psi-plus.info
M  network/psi/psi.info
M  network/purple-facebook/purple-facebook.info
M  network/purple-plugin-pack/purple-plugin-pack.info
M  network/pyNeighborhood/pyNeighborhood.info
M  network/qutebrowser/qutebrowser.info
M  network/smstools3/smstools3.info
M  network/w3m/w3m.info
M  network/wifi-radar/wifi-radar.info
M  office/aiksaurus/aiksaurus.info
M  office/calcurse/calcurse.info
M  office/gcal/gcal.info
M  office/python-gcalcli/python-gcalcli.info
M  perl/perl-Algorithm-Combinatorics/perl-Algorithm-Combinatorics.info
M  perl/perl-Algorithm-Loops/perl-Algorithm-Loops.info
M  perl/perl-IO-Interface/perl-IO-Interface.info
M  perl/perl-IO-String/perl-IO-String.info
M  perl/perl-MIME-Types/perl-MIME-Types.info
M  perl/perl-Math-BigInt-GMP/perl-Math-BigInt-GMP.info
M  perl/perl-Math-GMPq/perl-Math-GMPq.info
M  perl/perl-Math-GMPz/perl-Math-GMPz.info
M  perl/perl-Math-MPC/perl-Math-MPC.info
M  perl/perl-Math-MPFR/perl-Math-MPFR.info
M  perl/perl-Math-Prime-Util-GMP/perl-Math-Prime-Util-GMP.info
M  perl/perl-Math-Prime-Util/perl-Math-Prime-Util.info
M  perl/perl-Sidef/perl-Sidef.info
M  perl/perl-xml-libxml/perl-xml-libxml.info
M  python/importlib-resources/importlib-resources.info
M  python/python-urwid_readline/python-urwid_readline.info
M  python/python2-demjson/python2-demjson.info
M  python/python2-elementtree/python2-elementtree.info
M  python/python2-morbid/python2-morbid.info
M  python/python2-orbited/python2-orbited.info
M  python/python2-stomper/python2-stomper.info
M  python/python2-uuid/python2-uuid.info
M  python/python3-attrs/python3-attrs.info
M  system/atool/atool.info
M  system/daa2iso/daa2iso.info
M  system/driconf/driconf.info
M  system/goaccess/goaccess.info
M  system/imwheel/imwheel.info
M  system/ink/ink.info
M  system/lomoco/lomoco.info
M  system/ph/ph.info
M  system/powernowd/powernowd.info
M  system/python-urwid/python-urwid.info
M  system/regionset/regionset.info
M  system/stress-ng/stress-ng.info
M  system/uif2iso/uif2iso.info
M  system/upass/upass.info
M  system/wine/wine.info

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-06 08:28:36 +07:00
Petar Petrov cbb78a81c2
academic/zotero-gtk2: Added (Collect and share research sources)
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-06 08:28:23 +07:00
R. S. Ananda Murthy a337557ef0
academic/ngspice: Remove openmpi from REQUIRES.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-06 08:28:22 +07:00
Alan Alberghini 4f8065c52e
academic/stellarium: Updated for version 23.1.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-06 08:28:22 +07:00
Andrew Payne ce9a7ffade
academic/zotero: Updated for version 6.0.26.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-05-06 08:28:18 +07:00
Edward W. Koenig d82d0ff8bd
academic/boinc: Updated for version 7.22.7
Signed-off-by: Edward W. Koenig <kingbeowulf@linuxgalaxy.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-29 18:11:57 +07:00
Edward W. Koenig fe597aeed8
academic/Gridcoin-Research: Updated for version 5.4.5.0
Signed-off-by: Edward W. Koenig <kingbeowulf@linuxgalaxy.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-29 18:11:56 +07:00
Isaac Yu c129b24531
academic/xsimd: Updated for version 11.0.0.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-29 18:11:49 +07:00
Johannes Schoepfer 3720110648
academic/qucs-s: Updated for version 1.0.2.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-29 18:11:45 +07:00
Alexander Verbovetsky 1b72e7e629
academic/cadabra2: Update REQUIRES.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-29 18:11:43 +07:00
Juan M. Lasca c00e52a112
academic/plus42: Updated for version 1.0.18.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-29 18:11:41 +07:00
fourtysixandtwo 60fdef4afc
academic/dwave-neal: Update DEP.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-29 09:30:05 +07:00
brobr d8287a2b1b
academic/fastqc: Remove .svn folders that were causing java-errors.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-23 09:40:07 +07:00
D Woodfall 3a84941a9d
academic/calc: Updated for version 2.14.1.3.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:33 +07:00
Petar Petrov c60f8feb17
academic/iqtree: Updated for version 2.2.2.4.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:31 +07:00
Petar Petrov b846117b01
academic/IGV: Updated for version 2.16.1.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:31 +07:00
Petar Petrov 8f356b0a59
academic/biopython: Updated for version 1.81.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:31 +07:00
Petar Petrov cdcd66fbc6
academic/seaview: treerecs added to REQUIRES.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:31 +07:00
Petar Petrov b9ec7b5ad1
academic/treerecs: Added (Treerecs: a tree reconciliation tool)
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:30 +07:00
R.S.Ananda Murthy 2d2c304598
academic/fet: Updated for version 6.9.0.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:30 +07:00
Fellype do Nascimento 44c088db79
academic/labplot2: Updated for version 2.10.0.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:29 +07:00
Petar Petrov 4b69eb46aa
academic/gelemental: Updated for version 2.0.2.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:28 +07:00
Petar Petrov 24754b1661
academic/fiji: Updated for version 20221201_1017.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:28 +07:00
Petar Petrov 8335d28b86
academic/seqkit: Updated for version 2.4.0.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:28 +07:00
Petar Petrov 293d924030
academic/hyphy: Updated for version 2.5.49.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:28 +07:00
Petar Petrov 11335445ec
academic/pamlX: Fix paml docs dir.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:28 +07:00
Petar Petrov 1d8e849cb6
academic/paml: Updated for version 4.10.6.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:27 +07:00
ArTourter a68ba018ff
academic/nco: Updated for version 5.1.5.
Signed-off-by: ArTourter <artourter@gmail.com>
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 11:38:23 +07:00
afhpayne 769adc155a
academic/R: update 4.3.0
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-22 10:01:16 +07:00
Petar Petrov 328aeeafcb
academic/ugene: Updated for version 46.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-21 09:31:29 +07:00
Petar Petrov f9d9d4edfd
academic/spades: Updated for version 3.15.5.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-21 09:30:46 +07:00
Petar Petrov f34c8b2184
academic/jalview: Updated for version 2.11.2.5.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-21 09:30:11 +07:00
brobr 904f86ada5
academic/fastqc: Updated for version 0.12.1.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-15 07:15:40 +07:00
brobr 1c2c678c23
academic/samtools: Updated for version 1.17.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-15 07:15:39 +07:00
brobr 5fc76afc90
academic/bcftools: Updated for version 1.17.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-15 07:15:39 +07:00
brobr 68392eebc4
academic/pysam: Updated for version 0.21.0.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-15 07:15:38 +07:00
brobr 2ebab2060d
academic/rpy2: Updated for version 3.5.10.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-15 07:15:38 +07:00
brobr 8cd2bab738
academic/bowtie2: Updated for version 2.5.1.
Signed-off-by: Andrew Clemons <andrew.clemons@gmail.com>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-15 07:15:38 +07:00
Giancarlo Dessì fdf7c1f2fe
academic/avogadrolibs: Add VTK as optional dependency.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-15 07:15:24 +07:00
R. S. Ananda Murthy c68761e3a7
academic/ngspice: Updated for version 40.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-15 07:15:20 +07:00
brobr 99d572de54
academic/pyCRAC: Updated to version 1.5.2; crac_pipeline no longer included (see README)
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-15 06:41:28 +07:00
Giancarlo Dessì fca294ec70
academic/gaiasky: Added (3D universe simulator for desktop and VR)
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-08 09:16:28 +07:00
Fellype do Nascimento c0ac800795
academic/fityk: Updated for version 1.3.2.
Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-08 09:16:26 +07:00
Andrei Rabusov 1176ba5f59
academic/root: do not download and use gtest
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
2023-04-05 14:52:11 +07:00