libraries/trilinos: Removed (no dependees; conflicts with mpich and openmpi)
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
B. Watson
Willy Sudiarto Raharjo
parent
8375315fea
commit
ee01967bd9
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@ -1,21 +0,0 @@
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The Trilinos Project is an effort to develop algorithms and enabling
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technologies within an object-oriented software framework for the
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solution of large-scale, complex multi-physics engineering and
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scientific problems. A unique design feature of Trilinos is its focus
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on packages.
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The package has two building methods, the default is for a single
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system (without parallelism).
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* The trilinos can also be compiled against individual packages
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(i.e. amd, umfpack and metis) outside of suitesparse.SlackBuild.
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** The suitesparse.SlackBuild, doesn't build metis by default.
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For that you can use the parMETIS.SlackBuild.
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For more details about dependeces the Xyce webpage.
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have a list of required depences.
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Optional dependences:
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For enable parallelism set PARALLEL=yes. This requires the
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ParMETIS library and a MPI implementation (openmpi or mpich).
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To enable CUDA set CUDA=yes (Additional requirements: CUDA
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SDK and CUSPARSE).
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@ -1,19 +0,0 @@
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# HOW TO EDIT THIS FILE:
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# The "handy ruler" below makes it easier to edit a package description.
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||||
# Line up the first '|' above the ':' following the base package name, and
|
||||
# the '|' on the right side marks the last column you can put a character in.
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# You must make exactly 11 lines for the formatting to be correct. It's also
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# customary to leave one space after the ':' except on otherwise blank lines.
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|-----handy-ruler------------------------------------------------------|
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trilinos: trilinos (trilinos project)
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trilinos:
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trilinos: The Trilinos Project is an effort to develop algorithms and enabling
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trilinos: technologies within an object-oriented software framework for the
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trilinos: solution of large-scale, complex multi-physics engineering and
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trilinos: scientific problems. A unique design feature of Trilinos is its focus
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trilinos: on packages.
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trilinos:
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trilinos:
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trilinos:
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trilinos:
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@ -1,87 +0,0 @@
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diff -u -r trilinos-12.4.2-Source-orig/packages/epetra/src/Epetra_LAPACK.cpp trilinos-12.4.2-Source/packages/epetra/src/Epetra_LAPACK.cpp
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--- trilinos-12.4.2-Source-orig/packages/epetra/src/Epetra_LAPACK.cpp 2015-10-06 15:43:00.000000000 +0100
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+++ trilinos-12.4.2-Source/packages/epetra/src/Epetra_LAPACK.cpp 2016-06-05 18:03:12.619388060 +0100
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@@ -365,8 +365,11 @@
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double* A, const int LDA, double* B, const int LDB,
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double* ALPHA, double* BETA, double* U, const int LDU, double* V, const int LDV, double* Q, const int LDQ, double* WORK, int* IWORK,
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int* INFO) const {
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- DGGSVD_F77(CHAR_MACRO(JOBU), CHAR_MACRO(JOBV), CHAR_MACRO(JOBQ), &M, &N, &P, K, L, A, &LDA, B, &LDB,
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- ALPHA, BETA, U, &LDU, V, &LDV, Q, &LDQ, WORK, IWORK, INFO);
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+ int LWORK;
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+ LWORK = (3*N) > M ? 3*N : M;
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+ LWORK = (LWORK > P ? LWORK : P) + N;
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+ DGGSVD3_F77(CHAR_MACRO(JOBU), CHAR_MACRO(JOBV), CHAR_MACRO(JOBQ), &M, &N, &P, K, L, A, &LDA, B, &LDB,
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+ ALPHA, BETA, U, &LDU, V, &LDV, Q, &LDQ, WORK, &LWORK, IWORK, INFO);
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}
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//=============================================================================
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@@ -374,8 +377,11 @@
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float* A, const int LDA, float* B, const int LDB,
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float* ALPHA, float* BETA, float* U, const int LDU, float* V, const int LDV, float* Q, const int LDQ, float* WORK, int* IWORK,
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int* INFO) const {
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- SGGSVD_F77(CHAR_MACRO(JOBU), CHAR_MACRO(JOBV), CHAR_MACRO(JOBQ), &M, &N, &P, K, L, A, &LDA, B, &LDB,
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- ALPHA, BETA, U, &LDU, V, &LDV, Q, &LDQ, WORK, IWORK, INFO);
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+ int LWORK;
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+ LWORK = (3*N) > M ? 3*N : M;
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+ LWORK = (LWORK > P ? LWORK : P) + N;
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+ SGGSVD3_F77(CHAR_MACRO(JOBU), CHAR_MACRO(JOBV), CHAR_MACRO(JOBQ), &M, &N, &P, K, L, A, &LDA, B, &LDB,
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+ ALPHA, BETA, U, &LDU, V, &LDV, Q, &LDQ, WORK, &LWORK, IWORK, INFO);
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}
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//=============================================================================
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diff -u -r trilinos-12.4.2-Source-orig/packages/epetra/src/Epetra_LAPACK_wrappers.h trilinos-12.4.2-Source/packages/epetra/src/Epetra_LAPACK_wrappers.h
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--- trilinos-12.4.2-Source-orig/packages/epetra/src/Epetra_LAPACK_wrappers.h 2015-10-06 15:43:00.000000000 +0100
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+++ trilinos-12.4.2-Source/packages/epetra/src/Epetra_LAPACK_wrappers.h 2016-06-05 17:34:26.411666128 +0100
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@@ -73,7 +73,7 @@
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#define DGETRS_F77 SGETRS
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#define DGGEV_F77 SGGEV
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#define DGGLSE_F77 SGGLSE
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-#define DGGSVD_F77 SGGSVD
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+#define DGGSVD3_F77 SGGSVD3
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#define DHSEQR_F77 SHSEQR
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#define DLAIC1_F77 SLAIC1
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#define DLAMCH_F77 SLAMCH
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@@ -172,7 +172,7 @@
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#define DGETRS_F77 F77_BLAS_MANGLE(dgetrs,DGETRS)
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#define DGGEV_F77 F77_BLAS_MANGLE(dggev,DGGEV)
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#define DGGLSE_F77 F77_BLAS_MANGLE(dgglse,DGGLSE)
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-#define DGGSVD_F77 F77_BLAS_MANGLE(dggsvd,DGGSVD)
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+#define DGGSVD3_F77 F77_BLAS_MANGLE(dggsvd3,DGGSVD3)
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#define DHSEQR_F77 F77_BLAS_MANGLE(dhseqr,DHSEQR)
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#define DLAIC1_F77 F77_BLAS_MANGLE(dlaic1,DLAIC1)
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#define DLAMCH_F77 F77_BLAS_MANGLE(dlamch,DLAMCH)
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@@ -227,7 +227,7 @@
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#define SGETRS_F77 F77_BLAS_MANGLE(sgetrs,SGETRS)
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#define SGGEV_F77 F77_BLAS_MANGLE(sggev,SGGEV)
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#define SGGLSE_F77 F77_BLAS_MANGLE(sgglse,SGGLSE)
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-#define SGGSVD_F77 F77_BLAS_MANGLE(sggsvd,SGGSVD)
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+#define SGGSVD3_F77 F77_BLAS_MANGLE(sggsvd3,SGGSVD3)
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#define SHSEQR_F77 F77_BLAS_MANGLE(shseqr,SHSEQR)
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#define SLAMCH_F77 F77_BLAS_MANGLE(slamch,SLAMCH)
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#define SLARFT_F77 F77_BLAS_MANGLE(slarft,SLARFT)
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@@ -302,10 +302,10 @@
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double * vr, const int * ldvr, double * work, const int * lwork, int * info);
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void PREFIX DGGLSE_F77(const int * m, const int * n, const int * p, double * a, const int * lda, double * b, const int * ldb,
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double * c, double * d, double * x, double * work, const int * lwork, int * info);
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- void PREFIX DGGSVD_F77(Epetra_fcd, Epetra_fcd, Epetra_fcd, const int * m, const int * n, const int * p, int * k, int * l,
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+ void PREFIX DGGSVD3_F77(Epetra_fcd, Epetra_fcd, Epetra_fcd, const int * m, const int * n, const int * p, int * k, int * l,
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double * a, const int * lda, double * b, const int * ldb, double * alpha, double * beta,
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double * u, const int * ldu, double * v, const int * ldv, double * q, const int * ldq, double * work,
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- int * iwork, int * info);
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+ int * lwork, int * iwork, int * info);
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void PREFIX DHSEQR_F77(Epetra_fcd job, Epetra_fcd, const int * n, const int * ilo, const int * ihi, double * h, const int * ldh,
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double * wr, double * wi, double * z, const int * ldz, double * work, const int * lwork, int * info);
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double PREFIX DLAMCH_F77(Epetra_fcd);
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@@ -407,10 +407,10 @@
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float * vr, const int * ldvr, float * work, const int * lwork, int * info);
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void PREFIX SGGLSE_F77(const int * m, const int * n, const int * p, float * a, const int * lda, float * b, const int * ldb,
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float * c, float * d, float * x, float * work, const int * lwork, int * info);
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- void PREFIX SGGSVD_F77(Epetra_fcd, Epetra_fcd, Epetra_fcd, const int * m, const int * n, const int * p, int * k, int * l,
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+ void PREFIX SGGSVD3_F77(Epetra_fcd, Epetra_fcd, Epetra_fcd, const int * m, const int * n, const int * p, int * k, int * l,
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float * a, const int * lda, float * b, const int * ldb, float * alpha, float * beta,
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float * u, const int * ldu, float * v, const int * ldv, float * q, const int * ldq, float * work,
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- int * iwork, int * info);
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+ int * lwork, int * iwork, int * info);
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void PREFIX SHSEQR_F77(Epetra_fcd job, Epetra_fcd, const int * n, const int * ilo, const int * ihi, float * h, const int * ldh,
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float * wr, float * wi, float * z, const int * ldz, float * work, const int * lwork, int * info);
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float PREFIX SLAMCH_F77(Epetra_fcd);
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@ -1,209 +0,0 @@
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#!/bin/bash
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# Slackware build script for trilinos
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# Copyright 2015 Guilherme Calandrini - Madrid (Spain)
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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# permitted provided that the following conditions are met:
|
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#
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||||
# 1. Redistributions of this script must retain the above copyright
|
||||
# notice, this list of conditions and the following disclaimer.
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#
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||||
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
|
||||
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
|
||||
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
|
||||
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
|
||||
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
|
||||
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
|
||||
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
|
||||
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
|
||||
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||
|
||||
cd $(dirname $0) ; CWD=$(pwd)
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||||
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||||
PRGNAM=trilinos
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||||
VERSION=${VERSION:-12.6.3}
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||||
BUILD=${BUILD:-1}
|
||||
TAG=${TAG:-_SBo}
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||||
PKGTYPE=${PKGTYPE:-tgz}
|
||||
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||||
if [ -z "$ARCH" ]; then
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||||
case "$( uname -m )" in
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||||
i?86) ARCH=i486 ;;
|
||||
arm*) ARCH=arm ;;
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||||
*) ARCH=$( uname -m ) ;;
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||||
esac
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||||
fi
|
||||
|
||||
# If the variable PRINT_PACKAGE_NAME is set, then this script will report what
|
||||
# the name of the created package would be, and then exit. This information
|
||||
# could be useful to other scripts.
|
||||
if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
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||||
echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
|
||||
exit 0
|
||||
fi
|
||||
|
||||
TMP=${TMP:-/tmp/SBo}
|
||||
PKG=$TMP/package-$PRGNAM
|
||||
OUTPUT=${OUTPUT:-/tmp}
|
||||
|
||||
if [ "$ARCH" = "i486" ]; then
|
||||
SLKCFLAGS="-O2 -march=i486 -mtune=i686"
|
||||
LIBDIRSUFFIX=""
|
||||
elif [ "$ARCH" = "i686" ]; then
|
||||
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
|
||||
LIBDIRSUFFIX=""
|
||||
elif [ "$ARCH" = "x86_64" ]; then
|
||||
SLKCFLAGS="-O2 -fPIC"
|
||||
LIBDIRSUFFIX="64"
|
||||
else
|
||||
SLKCFLAGS="-O2"
|
||||
LIBDIRSUFFIX=""
|
||||
fi
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||||
|
||||
set -e
|
||||
|
||||
rm -rf $PKG
|
||||
mkdir -p $TMP $PKG $OUTPUT
|
||||
cd $TMP
|
||||
rm -rf $PRGNAM-$VERSION-Source
|
||||
tar jxvf $CWD/$PRGNAM-$VERSION-Source.tar.bz2
|
||||
cd $PRGNAM-$VERSION-Source
|
||||
chown -R root:root .
|
||||
find -L . \
|
||||
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
|
||||
-o -perm 511 \) -exec chmod 755 {} \; -o \
|
||||
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
|
||||
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
|
||||
|
||||
patch -p1 < $CWD/trilinos-12.4.2_lapack-3.6.0.patch
|
||||
|
||||
# Use CUDA SDK and CUSPARSE.
|
||||
if [ "${CUDA:-no}" == "yes" ]; then
|
||||
OPT_DEPS="$OPT_DEPS -DTPL_ENABLE_CUDA -DTPL_ENABLE_CUSPARSE"
|
||||
fi
|
||||
|
||||
if [ "${EXAMPLES:-yes}" == "no" ]; then
|
||||
OPT_DEPS="$OPT_DEPS -DTrilinos_ENABLE_EXAMPLES=OFF"
|
||||
fi
|
||||
|
||||
CFGSERIAL="-DCMAKE_C_COMPILER=/usr/bin/gcc \
|
||||
-DCMAKE_CXX_COMPILER=/usr/bin/g++ \
|
||||
-DCMAKE_Fortran_COMPILER=/usr/bin/gfortran \
|
||||
-DCMAKE_MAKE_PROGRAM=make \
|
||||
-DTrilinos_ENABLE_NOX=ON \
|
||||
-DNOX_ENABLE_LOCA=ON \
|
||||
-DTrilinos_ENABLE_EpetraExt=ON \
|
||||
-DEpetraExt_BUILD_BTF=ON \
|
||||
-DEpetraExt_BUILD_EXPERIMENTAL=ON \
|
||||
-DEpetraExt_BUILD_GRAPH_REORDERINGS=ON \
|
||||
-DTrilinos_ENABLE_TrilinosCouplings=ON \
|
||||
-DTrilinos_ENABLE_Ifpack=ON \
|
||||
-DTrilinos_ENABLE_Isorropia=ON \
|
||||
-DTrilinos_ENABLE_AztecOO=ON \
|
||||
-DTrilinos_ENABLE_Belos=ON \
|
||||
-DTrilinos_ENABLE_Teuchos=ON \
|
||||
-DTeuchos_ENABLE_COMPLEX=ON \
|
||||
-DTrilinos_ENABLE_Amesos=ON \
|
||||
-DAmesos_ENABLE_KLU=ON \
|
||||
-DAmesos_ENABLE_UMFPACK=ON \
|
||||
-DTrilinos_ENABLE_Sacado=ON \
|
||||
-DTrilinos_ENABLE_Kokkos=OFF \
|
||||
-DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES=OFF \
|
||||
-DTPL_ENABLE_AMD=ON \
|
||||
-DAMD_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \
|
||||
-DTPL_AMD_INCLUDE_DIRS=/usr/include/suitesparce \
|
||||
-DTPL_ENABLE_UMFPACK=ON \
|
||||
-DUMFPACK_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \
|
||||
-DTPL_UMFPACK_INCLUDE_DIRS=/usr/include/suitesparse \
|
||||
-DTPL_ENABLE_BLAS=ON \
|
||||
-DTPL_ENABLE_LAPACK=ON "
|
||||
|
||||
CFGPARALLEL="-DCMAKE_C_COMPILER=/usr/bin/mpicc \
|
||||
-DCMAKE_CXX_COMPILER=/usr/bin/mpic++ \
|
||||
-DCMAKE_Fortran_COMPILER=/usr/bin/mpif77 \
|
||||
-DCMAKE_MAKE_PROGRAM=make \
|
||||
-DTrilinos_ENABLE_NOX=ON \
|
||||
-DNOX_ENABLE_LOCA=ON \
|
||||
-DTrilinos_ENABLE_EpetraExt=ON \
|
||||
-DEpetraExt_BUILD_BTF=ON \
|
||||
-DEpetraExt_BUILD_EXPERIMENTAL=ON \
|
||||
-DEpetraExt_BUILD_GRAPH_REORDERINGS=ON \
|
||||
-DTrilinos_ENABLE_TrilinosCouplings=ON \
|
||||
-DTrilinos_ENABLE_Ifpack=ON \
|
||||
-DTrilinos_ENABLE_ShyLU=ON \
|
||||
-DTrilinos_ENABLE_Isorropia=ON \
|
||||
-DTrilinos_ENABLE_AztecOO=ON \
|
||||
-DTrilinos_ENABLE_Belos=ON \
|
||||
-DTrilinos_ENABLE_Teuchos=ON \
|
||||
-DTeuchos_ENABLE_COMPLEX=ON \
|
||||
-DTrilinos_ENABLE_Amesos=ON \
|
||||
-DAmesos_ENABLE_KLU=ON \
|
||||
-DAmesos_ENABLE_UMFPACK=ON \
|
||||
-DTrilinos_ENABLE_Sacado=ON \
|
||||
-DTrilinos_ENABLE_Kokkos=OFF \
|
||||
-DTrilinos_ENABLE_Zoltan=ON \
|
||||
-DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES=OFF \
|
||||
-DTPL_ENABLE_AMD=ON \
|
||||
-DAMD_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \
|
||||
-DTPL_AMD_INCLUDE_DIRS=/usr/include/suitesparse \
|
||||
-DTPL_ENABLE_UMFPACK=ON \
|
||||
-DUMFPACK_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \
|
||||
-DTPL_UMFPACK_INCLUDE_DIRS=/usr/include/suitesparse \
|
||||
-DTPL_ENABLE_BLAS=ON \
|
||||
-DTPL_ENABLE_LAPACK=ON \
|
||||
-DTPL_ENABLE_ParMETIS=ON \
|
||||
-DParMETIS_LIBRARY_DIRS=/usr/lib${LIBDIRSUFFIX} \
|
||||
-DTPL_ParMETIS_INCLUDE_DIRS=/usr/include/parmetis \
|
||||
-DTPL_ENABLE_MPI=ON "
|
||||
|
||||
CFGTRILINOS=$CFGSERIAL
|
||||
BUILDDIR=build-serial
|
||||
|
||||
if [ "${PARALLEL:-no}" == "yes" ]; then
|
||||
CFGTRILINOS=$CFGPARALLEL
|
||||
BUILDDIR=build-parallel
|
||||
SLKCFLAGS="CC=mpicc CXX=mpic++ F77=mpif77 $SLKCFLAGS"
|
||||
fi
|
||||
|
||||
mkdir -p $BUILDDIR
|
||||
cd $BUILDDIR
|
||||
|
||||
cmake \
|
||||
-DCMAKE_C_FLAGS:STRING="$SLKCFLAGS" \
|
||||
-DCMAKE_CXX_FLAGS:STRING="$SLKCFLAGS" \
|
||||
-DCMAKE_Fortran_FLAGS:STRING="$SLKCFLAGS" \
|
||||
-DCMAKE_INSTALL_PREFIX=/usr \
|
||||
-DTrilinos_INSTALL_LIB_DIR=/usr/lib${LIBDIRSUFFIX} \
|
||||
-DTrilinos_INSTALL_INCLUDE_DIR=/usr/include \
|
||||
$CFGTRILINOS \
|
||||
$OPT_DEPS \
|
||||
-DBUILD_SHARED_LIBS=ON \
|
||||
-DCMAKE_BUILD_TYPE=RELEASE ..
|
||||
|
||||
for f in $(grep -r -l /usr//usr/lib .); do
|
||||
sed -i -e 's:/usr//usr/lib:/usr/lib:g' $f
|
||||
done
|
||||
|
||||
make
|
||||
ctest
|
||||
make install DESTDIR=$PKG
|
||||
cd ..
|
||||
|
||||
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
|
||||
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
|
||||
|
||||
find $PKG -name perllocal.pod -o -name ".packlist" -o -name "*.bs" | xargs rm -f || true
|
||||
|
||||
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
|
||||
cp -a LICENSE $PKG/usr/doc/$PRGNAM-$VERSION
|
||||
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
|
||||
|
||||
mkdir -p $PKG/install
|
||||
cat $CWD/slack-desc > $PKG/install/slack-desc
|
||||
|
||||
cd $PKG
|
||||
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE
|
||||
|
|
@ -1,10 +0,0 @@
|
|||
PRGNAM="trilinos"
|
||||
VERSION="12.6.3"
|
||||
HOMEPAGE="https://github.com/trilinos/Trilinos"
|
||||
DOWNLOAD="https://ponce.cc/slackware/sources/repo/trilinos-12.6.3-Source.tar.bz2"
|
||||
MD5SUM="d94e31193559b334fd41d05eb22f9285"
|
||||
DOWNLOAD_x86_64=""
|
||||
MD5SUM_x86_64=""
|
||||
REQUIRES="lapack blas suitesparse"
|
||||
MAINTAINER="Guilherme Calandrini"
|
||||
EMAIL="g_calandrini[at]hotmail[dot]es"
|
||||
Loading…
Reference in New Issue