From eb54dd298a32662ab7cbfdd26cca9a78f9557218 Mon Sep 17 00:00:00 2001 From: Rob van Nues Date: Fri, 9 Oct 2020 02:23:23 +0100 Subject: [PATCH] academic/bowtie2: Updated for version 2.4.2. Signed-off-by: Dave Woodfall Signed-off-by: Willy Sudiarto Raharjo --- academic/bowtie2/bowtie2.SlackBuild | 6 ++---- academic/bowtie2/bowtie2.info | 6 +++--- 2 files changed, 5 insertions(+), 7 deletions(-) diff --git a/academic/bowtie2/bowtie2.SlackBuild b/academic/bowtie2/bowtie2.SlackBuild index 370b409bc0..fa8d2dfa04 100644 --- a/academic/bowtie2/bowtie2.SlackBuild +++ b/academic/bowtie2/bowtie2.SlackBuild @@ -25,7 +25,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=bowtie2 -VERSION=${VERSION:-2.4.1} +VERSION=${VERSION:-2.4.2} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -72,8 +72,6 @@ find -L . \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; #Use our FLAGS -#sed -i "/RELEASE_FLAGS/s/=/+=/" Makefile - RELEASE_FLAGS+="$SLKCFLAGS" \ make @@ -102,7 +100,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - AUTHORS LICENSE MANUAL NEWS TUTORIAL VERSION doc \ + AUTHORS LICENSE MANUAL NEWS TUTORIAL BOWTIE2_VERSION doc \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild diff --git a/academic/bowtie2/bowtie2.info b/academic/bowtie2/bowtie2.info index 8c3fb45d87..c57cd185f3 100644 --- a/academic/bowtie2/bowtie2.info +++ b/academic/bowtie2/bowtie2.info @@ -1,8 +1,8 @@ PRGNAM="bowtie2" -VERSION="2.4.1" +VERSION="2.4.2" HOMEPAGE="https://github.com/BenLangmead/bowtie2/releases" -DOWNLOAD="https://github.com/BenLangmead/bowtie2/archive/v2.4.1/bowtie2-2.4.1.tar.gz" -MD5SUM="5938482fab363c6356f9662cce38f99c" +DOWNLOAD="https://github.com/BenLangmead/bowtie2/archive/v2.4.2/bowtie2-2.4.2.tar.gz" +MD5SUM="d5f8674aed8bdbf6b96bd07f3df528ee" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="tbb python3"