academic/ugene: Updated for version 1.14.1.

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

academic/ugene/README

@@ -21,23 +21,25 @@ be launched on local resources or in a High Performance Computing
 built-in plugin system and structured UGENE API make it possible to
 extend the toolkit with new functionality.
 
-IMPORTANT: External tools
+EXTERNAL TOOLS
 UGENE can use and drive a number of external tools, providing a nice
 and unified GUI. These are not needed at build time, but are highly
 recommended for the complete (and extended) functionality of the
 program. Almost all of them can be found at SlackBuilds.org:
 
-- cistrome-CEAS (CEAS: Cis-regulatory Element Annotation System)
-- cistrome-MACS (MACS: Model-based Analysis of ChIP-Seq)
-- cufflinks (A reference-guided assembler for RNA-Seq experiments)
+- bedtools (A powerful toolset for genome arithmetic)
 - bowtie (A short read aligner of DNA sequences)
 - bowtie2 (A tool for aligning sequencing reads)
 - bwa (Burrows-Wheeler Aligner)
 - cap3 (CAP3: A DNA sequence assembly program)
+- cistrome-CEAS (CEAS: Cis-regulatory Element Annotation System)
+- cistrome-MACS (MACS: Model-based Analysis of ChIP-Seq)
 - clustalo (Clustal Omega)
 - clustalw (Multiple Sequence Alignment)
+- cufflinks (A reference-guided assembler for RNA-Seq experiments)
 - ncbi-blast (BLAST: Basic Local Alignment Search Tool)
 - ncbi-blast-plus (BLAST+ Command Line Applications)
+- PhyML (Phylogenetic estimation using Maximum Likelihood)
 - samtools (Sequence Alignment/Map Tools)
 - spidey (mRNA-to-genomic alignment)
 - t_coffee (A multiple sequence alignment program)

academic/ugene/slack-desc

@@ -16,4 +16,4 @@ ugene: user nterface. The toolkit supports multiple biological data formats
 ugene: and allows the retrieval of data from remote data sources.
 ugene:
 ugene: Home: http://ugene.unipro.ru/
-ugene: References: /usr/doc/ugene-1.13.3/References
+ugene: References: /usr/doc/ugene-1.14.1/References

academic/ugene/ugene.SlackBuild

@@ -23,7 +23,7 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=ugene
-VERSION=${VERSION:-1.13.3}
+VERSION=${VERSION:-1.14.1}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 

academic/ugene/ugene.info

@@ -1,8 +1,8 @@
 PRGNAM="ugene"
-VERSION="1.13.3"
+VERSION="1.14.1"
 HOMEPAGE="http://ugene.unipro.ru/"
-DOWNLOAD="http://ugene.unipro.ru/downloads/ugene-1.13.3.tar.gz"
-MD5SUM="c24bb76304c8e79bd62154941927326b"
+DOWNLOAD="http://ugene.unipro.ru/downloads/ugene-1.14.1.tar.gz"
+MD5SUM="d81d945a5e38dbb50b84156f40df6968"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES=""