academic/finchtv: Added (Brilliant Trace Viewer).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Petar Petrov
Willy Sudiarto Raharjo
parent
2a8cbdbdf9
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About Geospiza (http://www.geospiza.com/Company/default.shtml)
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Geospiza is a leading developer of enterprise-class software systems
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for workflow management of genetic analysis.
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Geospiza has established itself as the life science industry’s top
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software developer for meeting the combined laboratory, data
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management and analytical needs of biotechnology and pharmaceutical
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companies, universities, researchers, contract core and diagnostic
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laboratories involved in genetic testing and manufacturing bio-
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therapeutics.
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The life sciences field is rapidly evolving beyond sequencing genomes
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for pure research to developing clinically relevant initiatives such
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as understanding what genetic information is useful for drug
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development, determining drug efficacy, toxicity screening and
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diagnosing infectious agents.
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This expansion of the field is resulting in a dramatic increase in the
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amount of data that must be managed by genetic testing laboratories
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and research institutions. Underscoring this growth is the desire by
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the Food & Drug Administration (FDA) and the broader healthcare
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community to match drugs more specifically to a person's individual
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genetic profile. The FDA is expected to focus on the sensitivity and
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accuracy of these new diagnostics, thereby increasing the need for
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verifiable, repeatable processes for testing.
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Today, the amount of manual work required to manage and make sense of
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the vast amounts of genetic information being generated by clinical
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and life science research laboratories worldwide is tremendous. In
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order to be able to scale to meet this increased demand and scrutiny
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in a cost-effective way, automated solutions are required.
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Geospiza makes software for crunching the vast amounts of genetic
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data. When a laboratory uses GeneSifter Lab Edition, they are able to
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significantly increase capacity, reduce their backlog, eliminate
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errors due to manual processes, and speed time to discovery. The
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software is being used today worldwide by leading institutions and
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laboratories for everything from clinical DNA testing and bio-
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therapeutic manufacturing to contract core lab services and basic
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research and discovery.
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Geospiza's products are designed and built by biologists, enabling
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researchers to focus on the science, not the software.
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More Information
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info.geospiza@perkinelmer.com
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Call (206) 633-4403.
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©Copyright 2013 PerkinElmer, Inc. All rights reserved.
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Contact (http://www.geospiza.com/Contact/default.shtml)
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Headquarters:
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Geospiza, Inc.
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100 West Harrison
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North Tower, Suite #330
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Seattle, WA 98119
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Phone: (206) 633-4403
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Fax: (206) 633-4415
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General Information
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info.geospiza@perkinelmer.com
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Product Information
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sales.geospiza@perkinelmer.com
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Technical Support
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gpz.support@perkinelemer.com
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©Copyright 2013 PerkinElmer, Inc. All rights reserved.
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Privacy Policy (http://www.geospiza.com/privacy.shtml)
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Geospiza requires customers who register to use its Services to
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provide contact information, such as name, company name, address,
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phone number, and e-mail address. At the time you express interest in
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attaining additional information, or when you register for a Service,
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we may also ask for additional personal information, such as title,
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department name, fax number, or additional company information as well
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as billing name and address, credit card number or purchase order
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number, and the number of users within the organization that will be
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using the Service.
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Geospiza uses the information that is collected to set up these
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accounts for individuals and their organizations. We may also use the
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information to contact customers to further discuss customer interest
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in our company, its Services, and to send information regarding our
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company or partners, such as promotions and events. Customers are
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invited to receive an email newsletter by providing an email address.
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Customer email addresses and any personal customer information will
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not be distributed or shared with third parties. Customers can opt out
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of being contacted by us, or receiving such information from us, at
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any time by sending an email to gpz.support@perkinelmer.com.
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Separately, customers are also asked to provide an email address when
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registering for the Service, in order to receive a username and
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password. We may also email information regarding updates to Services
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or company, and will send a Customer Newsletter. Again, email will not
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be distributed or shared and customers can opt out of receiving any
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communication by emailing gpz.support@perkinelmer.com at the time it
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is distributed, or at the time any customer registers for a Service.
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Customers of the Service will be using the Service to host data and
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information ("Data"). Geospiza will not review, share, distribute,
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print, or reference any such Data except as provided in the Service’s
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Master Subscription Agreement, or as may be required by law.
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Individual records may at times be viewed or accessed only for the
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purpose of resolving a problem, support issue, or suspected violation
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of the Master Subscription Agreement, or as may be required by law.
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Of course, customers are responsible for maintaining the
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confidentiality and security of their user registration and password.
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©Copyright 2013 PerkinElmer, Inc. All rights reserved.
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FinchTV - A Brilliant Trace Viewer
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Geospiza's FinchTV is the popular way to view DNA sequence traces.
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FinchTV started as the only chromatogram viewer that can display an
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entire trace in a scalable multi-pane view. And it leads the way with
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raw data views, BLAST searching and the ability to reverse complement
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sequences and traces.
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This is just repackaging of the ready i386 binary. It WILL work on a
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stock Slackware64 as well (no multilib needed).
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NOTE!
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This program is free, but you should REGISTER in order to get it.
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This means you have to use a web browser to download the "source"
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tarball.
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if [ -x /usr/bin/update-desktop-database ]; then
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/usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
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fi
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#!/bin/sh
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# Slackware build script for finchtv
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# Copyright 2015 Petar Petrov, petar.petrov@student.oulu.fi
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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# permitted provided that the following conditions are met:
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#
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# 1. Redistributions of this script must retain the above copyright
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# notice, this list of conditions and the following disclaimer.
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#
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# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
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# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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PRGNAM=finchtv
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VERSION=${VERSION:-1.3.1}
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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SRCVER=1_3_1
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ARCH=i386 # This will work on a stock Slackware64 as well.
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CWD=$(pwd)
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TMP=${TMP:-/tmp/SBo}
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PKG=$TMP/package-$PRGNAM
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OUTPUT=${OUTPUT:-/tmp}
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set -e
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rm -rf $PKG
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mkdir -p $TMP $PKG $OUTPUT
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cd $TMP
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rm -rf ${PRGNAM}_${SRCVER}
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tar xvf $CWD/${PRGNAM}_${SRCVER}.tar.gz
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cd ${PRGNAM}_${SRCVER}
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chown -R root:root .
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find -L . \
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
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-o -perm 511 \) -exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
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-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
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install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM
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find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
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| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
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mkdir -p $PKG/usr/share/$PRGNAM
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cp -a SampleData $PKG/usr/share/$PRGNAM
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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cp -a Help License.txt ReleaseNotes.txt $PKG/usr/doc/$PRGNAM-$VERSION
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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cat $CWD/COMPANY > $PKG/usr/doc/$PRGNAM-$VERSION/COMPANY
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cat $CWD/CONTACT > $PKG/usr/doc/$PRGNAM-$VERSION/CONTACT
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cat $CWD/PRIVACY > $PKG/usr/doc/$PRGNAM-$VERSION/PRIVACY
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mkdir -p $PKG/usr/share/{applications,pixmaps}
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cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
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cp Help/media/FinchTV_Mac_App.png $PKG/usr/share/pixmaps/$PRGNAM.png
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mkdir -p $PKG/install
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cat $CWD/slack-desc > $PKG/install/slack-desc
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cat $CWD/doinst.sh > $PKG/install/doinst.sh
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cd $PKG
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/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
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[Desktop Entry]
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Categories=Education;
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Exec=finchtv
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Icon=finchtv.png
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Name=FinchTV
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StartupNotify=false
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Type=Application
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GenericName=
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PRGNAM="finchtv"
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VERSION="1.3.1"
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HOMEPAGE="http://www.geospiza.com/Products/finchtv.shtml"
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DOWNLOAD="http://www.geospiza.com/Products/finchtvdlrequest.shtml"
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MD5SUM="bafea0b08c5348cbe745d1a4857948a4"
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DOWNLOAD_x86_64=""
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MD5SUM_x86_64=""
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REQUIRES=""
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MAINTAINER="Petar Petrov"
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EMAIL="petar.petrov@oulu.oulu.fi"
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# HOW TO EDIT THIS FILE:
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# The "handy ruler" below makes it easier to edit a package description.
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# Line up the first '|' above the ':' following the base package name, and
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# the '|' on the right side marks the last column you can put a character in.
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# You must make exactly 11 lines for the formatting to be correct. It's also
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# customary to leave one space after the ':' except on otherwise blank lines.
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|-----handy-ruler------------------------------------------------------|
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finchtv: finchtv (A Brilliant Trace Viewer)
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finchtv:
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finchtv: Geospiza's FinchTV is the popular way to view DNA sequence traces.
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finchtv: FinchTV started as the only chromatogram viewer that can display
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finchtv: an entire trace in a scalable multi-pane view. And it leads the
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finchtv: way with raw data views, BLAST searching and the ability to reverse
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finchtv: complement sequences and traces.
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finchtv:
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finchtv: Home: http://www.geospiza.com/Products/finchtv.shtml
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finchtv:
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finchtv:
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