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libraries/CHOLMOD: Updated for version 1.7.3. 

Signed-off-by: dsomero <xgizzmo@slackbuilds.org>
This commit is contained in:
Kyle Guinn 2011-06-19 10:29:52 -04:00 committed by Robby Workman
parent 6600559a54
commit d34b25d836
4 changed files with 87 additions and 61 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

10
libraries/CHOLMOD/CHOLMOD.SlackBuild
View File

@ -4,7 +4,7 @@
# Written by Kyle Guinn <elyk03@gmail.com>
PRGNAM=CHOLMOD
VERSION=${VERSION:-1.7.1}
VERSION=${VERSION:-1.7.3}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@ -38,6 +38,9 @@ else
LIBDIRSUFFIX=""
fi
# Recommended by SuiteSparse
SLKCFLAGS="$SLKCFLAGS -fexceptions -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE"
set -e
rm -rf $PKG
@ -57,14 +60,17 @@ fi
autoreconf -vif
CFLAGS="$SLKCFLAGS" \
CXXFLAGS="$SLKCFLAGS" \
FFLAGS="$SLKCFLAGS" \
./configure \
--prefix=/usr \
--libdir=/usr/lib${LIBDIRSUFFIX} \
--sysconfdir=/etc \
--localstatedir=/var \
--mandir=/usr/man \
--infodir=/usr/info \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--enable-shared \
--disable-static \
--build=$ARCH-slackware-linux
make

6
libraries/CHOLMOD/CHOLMOD.info
View File

@ -1,8 +1,8 @@
PRGNAM="CHOLMOD"
VERSION="1.7.1"
VERSION="1.7.3"
HOMEPAGE="http://www.cise.ufl.edu/research/sparse/cholmod/"
DOWNLOAD="http://www.cise.ufl.edu/research/sparse/cholmod/CHOLMOD-1.7.1.tar.gz"
MD5SUM="9032c5724bee43ccd8f4546338a29fac"
DOWNLOAD="http://www.cise.ufl.edu/research/sparse/cholmod/CHOLMOD-1.7.3.tar.gz"
MD5SUM="e3bcfeefe40a2f3ef712e1bd3ec36781"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
MAINTAINER="Kyle Guinn"

130
libraries/CHOLMOD/autotoolize.diff
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@ -3,7 +3,7 @@ new file mode 100644
--- /dev/null
+++ b/Check/Makefile.am
@@ -0,0 +1,24 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
+
+EXTRA_DIST = \
+ License.txt \
@ -32,7 +32,7 @@ new file mode 100644
--- /dev/null
+++ b/Cholesky/Makefile.am
@@ -0,0 +1,41 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(COLAMD_CFLAGS) $(AMD_CFLAGS) $(UFCONFIG_CFLAGS)
+
+EXTRA_DIST = \
+ License.txt \
@ -64,11 +64,11 @@ new file mode 100644
+ libcholesky.la
+
+libcholeskyi_la_SOURCES = $(CHOLESKYSRC)
+libcholeskyi_la_LIBADD = -lcolamd -lamd -lm
+libcholeskyi_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) -lm
+libcholeskyi_la_CPPFLAGS = $(AM_CPPFLAGS)
+
+libcholeskyl_la_SOURCES = $(CHOLESKYSRC)
+libcholeskyl_la_LIBADD = -lcolamd -lamd -lm
+libcholeskyl_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) -lm
+libcholeskyl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
+
+libcholesky_la_SOURCES =
@ -78,7 +78,7 @@ new file mode 100644
--- /dev/null
+++ b/Core/Makefile.am
@@ -0,0 +1,43 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
+
+EXTRA_DIST = \
+ License.txt \
@ -126,7 +126,7 @@ new file mode 100644
--- /dev/null
+++ b/Demo/Makefile.am
@@ -0,0 +1,51 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
+
+EXTRA_DIST = \
+ License.txt \
@ -421,16 +421,18 @@ diff --git a/Include/Makefile.am b/Include/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Include/Makefile.am
@@ -0,0 +1,40 @@
@@ -0,0 +1,42 @@
+EXTRA_DIST = \
+ License.txt \
+ README.txt
+
+pkgincludedir = $(includedir)/cholmod
+
+# Automatically generated headers
+nodist_include_HEADERS = \
+nodist_pkginclude_HEADERS = \
+ cholmod_config.h
+
+include_HEADERS = \
+pkginclude_HEADERS = \
+ cholmod.h \
+ cholmod_blas.h \
+ cholmod_complexity.h \
@ -440,27 +442,27 @@ new file mode 100644
+ cholmod_template.h
+
+if MOD_CHECK
+include_HEADERS += cholmod_check.h
+pkginclude_HEADERS += cholmod_check.h
+endif
+
+if MOD_CHOLESKY
+include_HEADERS += cholmod_cholesky.h
+pkginclude_HEADERS += cholmod_cholesky.h
+endif
+
+if MOD_PARTITION
+include_HEADERS += cholmod_partition.h
+pkginclude_HEADERS += cholmod_partition.h
+endif
+
+if MOD_MATRIXOPS
+include_HEADERS += cholmod_matrixops.h
+pkginclude_HEADERS += cholmod_matrixops.h
+endif
+
+if MOD_MODIFY
+include_HEADERS += cholmod_modify.h
+pkginclude_HEADERS += cholmod_modify.h
+endif
+
+if MOD_SUPERNODAL
+include_HEADERS += cholmod_supernodal.h
+pkginclude_HEADERS += cholmod_supernodal.h
+endif
diff --git a/Include/cholmod_config.h b/Include/cholmod_config.h.in
rename from Include/cholmod_config.h
@ -514,15 +516,18 @@ diff --git a/Makefile.am b/Makefile.am
new file mode 100644
--- /dev/null
+++ b/Makefile.am
@@ -0,0 +1,40 @@
@@ -0,0 +1,43 @@
+SUBDIRS = Include Core
+EXTRA_DIST = README.txt
+
+pkgconfigdir = $(libdir)/pkgconfig
+pkgconfig_DATA = cholmod.pc
+
+lib_LTLIBRARIES = libcholmod.la
+
+libcholmod_la_SOURCES =
+libcholmod_la_LIBADD = $(top_builddir)/Core/libcore.la
+libcholmod_la_LDFLAGS = -no-undefined -version-info 8:1:7
+libcholmod_la_LDFLAGS = -no-undefined -version-info 8:3:7
+
+if MOD_CHECK
+SUBDIRS += Check
@ -560,7 +565,7 @@ new file mode 100644
--- /dev/null
+++ b/MatrixOps/Makefile.am
@@ -0,0 +1,35 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
+
+EXTRA_DIST = \
+ License.txt \
@ -600,7 +605,7 @@ new file mode 100644
--- /dev/null
+++ b/Modify/Makefile.am
@@ -0,0 +1,30 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
+
+EXTRA_DIST = \
+ License.txt \
@ -635,7 +640,7 @@ new file mode 100644
--- /dev/null
+++ b/Partition/Makefile.am
@@ -0,0 +1,28 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(METIS_CFLAGS)
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(METIS_CFLAGS) $(CCOLAMD_CFLAGS) $(CAMD_CFLAGS) $(UFCONFIG_CFLAGS)
+
+EXTRA_DIST = \
+ License.txt \
@ -654,11 +659,11 @@ new file mode 100644
+ libpartition.la
+
+libpartitioni_la_SOURCES = $(PARTITIONSRC)
+libpartitioni_la_LIBADD = $(METIS_LIBS) -lccolamd -lcamd -lm
+libpartitioni_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) -lm
+libpartitioni_la_CPPFLAGS = $(AM_CPPFLAGS)
+
+libpartitionl_la_SOURCES = $(PARTITIONSRC)
+libpartitionl_la_LIBADD = $(METIS_LIBS) -lccolamd -lcamd -lm
+libpartitionl_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) -lm
+libpartitionl_la_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG
+
+libpartition_la_SOURCES =
@ -668,7 +673,7 @@ new file mode 100644
--- /dev/null
+++ b/Supernodal/Makefile.am
@@ -0,0 +1,30 @@
+AM_CPPFLAGS = -I$(top_srcdir)/Include
+AM_CPPFLAGS = -I$(top_srcdir)/Include $(UFCONFIG_CFLAGS)
+
+EXTRA_DIST = \
+ License.txt \
@ -1032,13 +1037,30 @@ new file mode 100644
+ $2
+fi
+])dnl ACX_LAPACK
diff --git a/cholmod.pc.in b/cholmod.pc.in
new file mode 100644
--- /dev/null
+++ b/cholmod.pc.in
@@ -0,0 +1,12 @@
+prefix=@prefix@
+exec_prefix=@exec_prefix@
+libdir=@libdir@
+includedir=@includedir@
+
+Name: @PACKAGE_NAME@
+Description: Sparse Cholesky factorization
+Version: @PACKAGE_VERSION@
+Requires.private: @CHOLMOD_REQUIRES@
+Libs: -L${libdir} -lcholmod
+Libs.private: @LAPACK_LIBS@ @BLAS_LIBS@ -lm
+Cflags: -I${includedir}/cholmod
diff --git a/configure.ac b/configure.ac
new file mode 100644
--- /dev/null
+++ b/configure.ac
@@ -0,0 +1,179 @@
+AC_PREREQ([2.65])
+AC_INIT([CHOLMOD], [1.7.1], [davis@cise.ufl.edu])
@@ -0,0 +1,177 @@
+AC_PREREQ([2.68])
+AC_INIT([CHOLMOD],[1.7.3],[davis@cise.ufl.edu])
+AC_CONFIG_SRCDIR([Core/cholmod_common.c])
+AC_CONFIG_HEADER([config.h])
+AM_INIT_AUTOMAKE([foreign])
@ -1136,38 +1158,36 @@ new file mode 100644
+
+AC_CHECK_LIB([m], [sqrt])
+
+if test "x$mod_cholesky" = "xyes"; then
+ AC_CHECK_HEADERS([amd.h])
+ AC_CHECK_LIB([amd], [amd_info],
+ [],
+ [AC_MSG_ERROR([cannot find libamd (required by mod-cholesky)])])
+AC_CHECK_HEADERS([stddef.h stdlib.h string.h])
+
+ AC_CHECK_HEADERS([colamd.h])
+ AC_CHECK_LIB([colamd], [colamd_recommended],
+ [],
+ [AC_MSG_ERROR([cannot find libcolamd (required by mod-cholesky)])])
+PKG_PROG_PKG_CONFIG
+PKG_CHECK_MODULES([UFCONFIG],[ufconfig],
+ [],
+ [AC_MSG_ERROR([cannot find ufconfig])])
+CHOLMOD_REQUIRES="ufconfig"
+
+if test "x$mod_cholesky" = "xyes"; then
+ PKG_CHECK_MODULES([AMD],[amd],
+ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES amd"],
+ [AC_MSG_ERROR([cannot find amd (required by mod-cholesky)])])
+
+ PKG_CHECK_MODULES([COLAMD],[colamd],
+ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES colamd"],
+ [AC_MSG_ERROR([cannot find colamd (required by mod-cholesky)])])
+fi
+
+if test "x$mod_partition" = "xyes"; then
+ PKG_PROG_PKG_CONFIG
+ if test -n "$PKG_CONFIG"; then
+ PKG_CHECK_MODULES([METIS], [metis])
+ else
+ AC_CHECK_HEADERS([metis.h])
+ AC_CHECK_LIB([metis], [METIS_NodeND],
+ [METIS_LIBS=-lmetis],
+ [AC_MSG_ERROR([cannot find libmetis (required by mod-partition)])])
+ fi
+ PKG_CHECK_MODULES([METIS],[metis],
+ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES metis"],
+ [AC_MSG_ERROR([cannot find metis (required by mod-partition)])])
+
+ AC_CHECK_HEADERS([ccolamd.h])
+ AC_CHECK_LIB([ccolamd], [ccolamd_report],
+ [],
+ [AC_MSG_ERROR([cannot find libccolamd (required by mod-partition)])])
+PKG_CHECK_MODULES([CAMD],[camd],
+ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES camd"],
+ [AC_MSG_ERROR([cannot find camd (required by mod-partition)])])
+
+ AC_CHECK_HEADERS([camd.h])
+ AC_CHECK_LIB([camd], [camd_info],
+ [],
+ [AC_MSG_ERROR([cannot find libcamd (required by mod-partition)])])
+PKG_CHECK_MODULES([CCOLAMD],[ccolamd],
+ [CHOLMOD_REQUIRES="$CHOLMOD_REQUIRES ccolamd"],
+ [AC_MSG_ERROR([cannot find ccolamd (required by mod-partition)])])
+fi
+
+if test "x$mod_supernodal" = "xyes"; then
@ -1184,9 +1204,6 @@ new file mode 100644
+ fi
+fi
+
+AC_CHECK_HEADERS([stddef.h stdlib.h string.h])
+AC_CHECK_HEADERS([UFconfig.h])
+
+AC_TYPE_SIZE_T
+
+AC_FUNC_MALLOC
@ -1201,7 +1218,10 @@ new file mode 100644
+AM_CONDITIONAL([MOD_MODIFY], [test "x$mod_modify" = "xyes"])
+AM_CONDITIONAL([MOD_SUPERNODAL], [test "x$mod_supernodal" = "xyes"])
+
+AC_SUBST([CHOLMOD_REQUIRES])
+
+AC_CONFIG_FILES([
+ cholmod.pc
+ Makefile
+ Check/Makefile
+ Cholesky/Makefile

2
libraries/CHOLMOD/slack-desc
View File

@ -6,7 +6,7 @@
# customary to leave one space after the ':'.
|-----handy-ruler------------------------------------------------------|
CHOLMOD: CHOLMOD (sparse matrix factorizing routines)
CHOLMOD: CHOLMOD (sparse matrix factoring routines)
CHOLMOD:
CHOLMOD: CHOLMOD is a set of ANSI C routines for sparse Cholesky
CHOLMOD: factorization and update/downdate.