From c438969e424f0e830c6bb2d58a93b3dc8d4672dd Mon Sep 17 00:00:00 2001
From: Rob van Nues <sborg63@disroot.org>
Date: Sat, 22 Dec 2018 00:03:06 -0900
Subject: [PATCH] academic/fastqc: Updated for version 0.11.8 + new maintainer.

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
---
 academic/fastqc/doinst.sh         |  5 +++++
 academic/fastqc/fastqc.SlackBuild | 13 ++++++++-----
 academic/fastqc/fastqc.info       | 10 +++++-----
 3 files changed, 18 insertions(+), 10 deletions(-)

diff --git a/academic/fastqc/doinst.sh b/academic/fastqc/doinst.sh
index 5fb28930db..d9483a16ab 100644
--- a/academic/fastqc/doinst.sh
+++ b/academic/fastqc/doinst.sh
@@ -1,3 +1,8 @@
 if [ -x /usr/bin/update-desktop-database ]; then
   /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
 fi
+
+( cd usr/bin ; rm -rf fastqc )
+( cd usr/bin ; ln -sf ../share/java/fastqc/fastqc fastqc )
+( cd usr/doc/fastqc-0.11.8 ; rm -rf Help )
+( cd usr/doc/fastqc-0.11.8 ; ln -sf ../../share/java/fastqc/Help Help )
diff --git a/academic/fastqc/fastqc.SlackBuild b/academic/fastqc/fastqc.SlackBuild
index 096d364dff..72021c6af6 100644
--- a/academic/fastqc/fastqc.SlackBuild
+++ b/academic/fastqc/fastqc.SlackBuild
@@ -2,7 +2,7 @@
 
 # Slackware build script for fastqc
 
-# Copyright 2015-2018 Petar Petrov slackalaxy@gmail.com
+# Copyright 2015-2018 Petar Petrov slackalaxy@gmail.com; 2018 Rob van Nues sborg63.org
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -24,8 +24,8 @@
 
 PRGNAM=fastqc
 SRCNAM=FastQC
-VERSION=${VERSION:-0.11.7}
-SRCVER=${SRCVER:-v0.11.7}
+VERSION=${VERSION:-0.11.8}
+SRCVER=${SRCVER:-v0.11.8}
 
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
@@ -58,7 +58,7 @@ find -L . \
   -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
 
 install -D -m755 $PRGNAM $PKG/usr/share/java/$PRGNAM/$PRGNAM
-cp -a Configuration net org Templates uk $JBZIP $SAM $CISD $PKG/usr/share/java/$PRGNAM
+cp -a Configuration net org Templates Help uk $JBZIP $SAM $CISD $PKG/usr/share/java/$PRGNAM
 
 mkdir -p $PKG/usr/bin
 cd $PKG/usr/bin
@@ -69,7 +69,10 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
   | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a Help *.txt $PKG/usr/doc/$PRGNAM-$VERSION
+cd $PKG/usr/doc/$PRGNAM-$VERSION
+ln -s ../../share/java/$PRGNAM/Help
+cd -
+cp -a *.txt $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 
 # Menu item and icon
diff --git a/academic/fastqc/fastqc.info b/academic/fastqc/fastqc.info
index 688ead331e..39ebe38dbe 100644
--- a/academic/fastqc/fastqc.info
+++ b/academic/fastqc/fastqc.info
@@ -1,10 +1,10 @@
 PRGNAM="fastqc"
-VERSION="0.11.7"
+VERSION="0.11.8"
 HOMEPAGE="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
-DOWNLOAD="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.7.zip"
-MD5SUM="8fead05fa62c5e723f0d2157a9b5fcd4"
+DOWNLOAD="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.8.zip"
+MD5SUM="bdaf3b9fe957681b3a12349fdfa1c6c0"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES="jdk"
-MAINTAINER="Petar Petrov"
-EMAIL="slackalaxy@gmail.com"
+MAINTAINER="Rob van Nues"
+EMAIL="sborg63@disroot.org"