diff --git a/academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch b/academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch deleted file mode 100644 index 6bc26e1f19..0000000000 --- a/academic/ugene/ugene-1.22.0-dont_hardcode_includes.patch +++ /dev/null @@ -1,24 +0,0 @@ -diff -up ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri ---- ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri.dont_hardcode_includes 2016-03-31 07:21:56.000000000 -0500 -+++ ugene-1.22.0/src/libs_3rdparty/samtools/samtools.pri 2016-06-02 17:49:02.383069490 -0500 -@@ -3,7 +3,7 @@ UGENE_RELATIVE_DESTDIR = '' - - TEMPLATE = lib - CONFIG +=thread debug_and_release staticlib warn_off --INCLUDEPATH += src src/samtools ../../include /usr/include -+INCLUDEPATH += src src/samtools ../../include - win32 : INCLUDEPATH += src/samtools/win32 - DEFINES+="_FILE_OFFSET_BITS=64" _LARGEFILE64_SOURCE _USE_KNETFILE - win32 : DEFINES += _USE_MATH_DEFINES "inline=__inline" "__func__=__FUNCTION__" "R_OK=4" "atoll=_atoi64" "alloca=_alloca" -diff -up ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri ---- ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri.dont_hardcode_includes 2016-03-31 07:22:09.000000000 -0500 -+++ ugene-1.22.0/src/plugins_3rdparty/variants/variants.pri 2016-06-02 20:26:35.265356432 -0500 -@@ -20,7 +20,7 @@ use_bundled_zlib() { - win32 : LIBS += -lwsock32 - - --INCLUDEPATH += src ../../include /usr/include -+INCLUDEPATH += src ../../include - INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools - INCLUDEPATH += ../../libs_3rdparty/samtools/src - INCLUDEPATH += ../../libs_3rdparty/samtools/src/samtools/bcftools diff --git a/academic/ugene/ugene.SlackBuild b/academic/ugene/ugene.SlackBuild index 9ebc39636d..0fa277e794 100644 --- a/academic/ugene/ugene.SlackBuild +++ b/academic/ugene/ugene.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ugene -# Copyright 2013-2020 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2021 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=ugene -VERSION=${VERSION:-35.0} +VERSION=${VERSION:-38.1} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -73,9 +73,6 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# Thanks fedora -patch -p1 < $CWD/ugene-1.22.0-dont_hardcode_includes.patch - # Fix libraries and man pages paths sed -i "s:/lib:/lib${LIBDIRSUFFIX}:g" src/ugene_globals.pri sed -i "s:/share/man:/man:g" src/ugene_globals.pri @@ -92,7 +89,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - build.txt README.md LICENSE.txt LICENSE.3rd_party.txt \ + README.md LICENSE.txt LICENSE.3rd_party.txt \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild diff --git a/academic/ugene/ugene.info b/academic/ugene/ugene.info index 6c1efb058c..3c98a2c536 100644 --- a/academic/ugene/ugene.info +++ b/academic/ugene/ugene.info @@ -1,8 +1,8 @@ PRGNAM="ugene" -VERSION="35.0" +VERSION="38.1" HOMEPAGE="http://ugene.net/" -DOWNLOAD="https://github.com/ugeneunipro/ugene/archive/35.0/ugene-35.0.tar.gz" -MD5SUM="c1cb1ee73140d09568706f1fc1b798dd" +DOWNLOAD="https://github.com/ugeneunipro/ugene/archive/38.1/ugene-38.1.tar.gz" +MD5SUM="4add1b1c0216ce42e588e982a3d7147e" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES=""