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academic/seaview: Updated for version 4.6.1.2. 

Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
This commit is contained in:
Petar Petrov 2016-11-26 23:15:57 +00:00 committed by Willy Sudiarto Raharjo
parent a356bf0af4
commit a4759dfac8
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GPG Key ID: 887B8374D7333381
4 changed files with 9 additions and 9 deletions
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2
academic/seaview/README
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@ -16,7 +16,7 @@ sequence alignment and molecular phylogeny. Important features are:
a) parsimony, using PHYLIP's dnapars/protpars algorithm a) parsimony, using PHYLIP's dnapars/protpars algorithm
b) distance, with NJ or BioNJ algorithms on a variety of b) distance, with NJ or BioNJ algorithms on a variety of
evolutionary distances, evolutionary distances,
c) maximum likelihood, driving program PhyML 3.1. c) maximum likelihood, driving program PhyML
5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or 5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or
PostScript files. PostScript files.

8
academic/seaview/seaview.SlackBuild
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@ -26,13 +26,13 @@
# Thanks to developer Dr. Manolo Gouy for all his help. # Thanks to developer Dr. Manolo Gouy for all his help.
PRGNAM=seaview PRGNAM=seaview
VERSION=${VERSION:-4.6} VERSION=${VERSION:-4.6.1.2}
BUILD=${BUILD:-1} BUILD=${BUILD:-1}
TAG=${TAG:-_SBo} TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then if [ -z "$ARCH" ]; then
case "$( uname -m )" in case "$( uname -m )" in
i?86) ARCH=i486 ;; i?86) ARCH=i586 ;;
arm*) ARCH=arm ;; arm*) ARCH=arm ;;
*) ARCH=$( uname -m ) ;; *) ARCH=$( uname -m ) ;;
esac esac
@ -43,8 +43,8 @@ TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp} OUTPUT=${OUTPUT:-/tmp}
if [ "$ARCH" = "i486" ]; then if [ "$ARCH" = "i586" ]; then
SLKCFLAGS="-O2 -march=i486 -mtune=i686" SLKCFLAGS="-O2 -march=i586 -mtune=i686"
LIBDIRSUFFIX="" LIBDIRSUFFIX=""
elif [ "$ARCH" = "i686" ]; then elif [ "$ARCH" = "i686" ]; then
SLKCFLAGS="-O2 -march=i686 -mtune=i686" SLKCFLAGS="-O2 -march=i686 -mtune=i686"

6
academic/seaview/seaview.info
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@ -1,8 +1,8 @@
PRGNAM="seaview" PRGNAM="seaview"
VERSION="4.6" VERSION="4.6.1.2"
HOMEPAGE="http://doua.prabi.fr/software/seaview" HOMEPAGE="http://doua.prabi.fr/software/seaview"
DOWNLOAD="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.tar.gz" DOWNLOAD="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.1.2.tar.gz"
MD5SUM="e031093389bc7973625993817a1dcb73" MD5SUM="4beb86e6faef2137c2efc8ec6e4d83b8"
DOWNLOAD_x86_64="" DOWNLOAD_x86_64=""
MD5SUM_x86_64="" MD5SUM_x86_64=""
REQUIRES="fltk PDFlib-Lite Gblocks PhyML clustalo muscle" REQUIRES="fltk PDFlib-Lite Gblocks PhyML clustalo muscle"

2
academic/seaview/slack-desc
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@ -11,7 +11,7 @@ seaview:
seaview: SeaView is a multiplatform, graphical user interface for multiple seaview: SeaView is a multiplatform, graphical user interface for multiple
seaview: sequence alignment and molecular phylogeny. seaview: sequence alignment and molecular phylogeny.
seaview: seaview:
seaview: References: /usr/doc/seaview-4.6/References seaview: References: /usr/doc/seaview-4.6.1.2/References
seaview: Home: http://doua.prabi.fr/software/seaview seaview: Home: http://doua.prabi.fr/software/seaview
seaview: seaview:
seaview: seaview: