academic/EMBASSY: Updated for version 6.6.0.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Petar Petrov
Erik Hanson
parent
3489ae3da8
commit
94efe73619
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@ -2,7 +2,7 @@
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# Slackware build script for EMBASSY
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# Copyright 2011-2012 Petar Petrov, ppetrov@paju.oulu.fi
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# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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@ -23,7 +23,7 @@
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE
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PRGNAM=EMBASSY
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VERSION=${VERSION:-6.5.7} # Keep this the same version as EMBOSS
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VERSION=${VERSION:-6.6.0} # Keep this the same version as EMBOSS
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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@ -56,7 +56,7 @@ fi
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# EMBASSY components and their versions
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CBSTOOLS=CBSTOOLS-1.0.0.650
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CLUSTALOMEGA=CLUSTALOMEGA-0.2.0.650
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CLUSTALOMEGA=CLUSTALOMEGA-1.1.0
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DOMAINATRIX=DOMAINATRIX-0.1.650
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DOMALIGN=DOMALIGN-0.1.650
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DOMSEARCH=DOMSEARCH-0.1.650
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@ -105,10 +105,10 @@ tar xvf $CWD/$VIENNA.tar.gz
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chown -R root:root .
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find -L . \
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \
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-exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
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-exec chmod 644 {} \;
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
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-o -perm 511 \) -exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
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-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
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# Build CBSTOOLS
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cd $TMP/$PRGNAM-$VERSION/$CBSTOOLS
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@ -1,44 +1,44 @@
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PRGNAM="EMBASSY"
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VERSION="6.5.7"
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VERSION="6.6.0"
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HOMEPAGE="http://emboss.sourceforge.net/embassy/"
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DOWNLOAD="ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/CBSTOOLS-1.0.0.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/CLUSTALOMEGA-0.2.0.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/DOMAINATRIX-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/DOMALIGN-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/DOMSEARCH-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/EMNU-1.05.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/ESIM4-1.0.0.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/HMMER-2.3.2.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/IPRSCAN-4.3.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MEME-4.7.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MSE-3.0.0.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MYEMBOSS-6.5.1.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/MYEMBOSSDEMO-6.5.0.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/PHYLIPNEW-3.69.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/SIGNATURE-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/STRUCTURE-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/TOPO-2.0.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/VIENNA-1.7.2.650.tar.gz"
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MD5SUM="4913776ee5ff93ae839762107f8d8bc8 \
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f24967741eb2fe9c3bccd6458276e127 \
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d7539f6ee6f25bb401ffad2802441010 \
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079a6371390201fa39f19c25cce8d5ba \
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5fd0e943f4db9f9ea008eabd68dc60e7 \
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6e0b7ac797554c52f413d23e5781e71b \
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2ca9069bf9c87697bf52c77b25a659d7 \
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d82017cc68ce3d381e8cc6dcfd68f39e \
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81720978302afc8d855b316651be5b2a \
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4d2dac5a2d66ad43552271be81c1cd1b \
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3b26ecbdf8032680f1de148f5d91d776 \
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54e9ca4dadd0b988f8964f886c6f026c \
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f3cb3421a79e7e6466686628de346b20 \
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488d117d32a391a9b53c60260595e67b \
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361773a6f1b0b862f5cbf3d4d3ee1fa0 \
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40afa99f995f34275005b76f8b05c337 \
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5a0b0c478cece42cc564599b91f9c1cf \
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633c16e28818b0dc4d3ae084a7beae56"
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DOWNLOAD="ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/MYEMBOSS-6.5.1.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/MYEMBOSSDEMO-6.5.0.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.650.tar.gz \
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ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.650.tar.gz"
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MD5SUM="237577573d9cbe5df18bac8dae17240b \
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e4243a86c6127d99b1d501a54a7fbbf3 \
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5cbc136ded7826a0066e51074738a5a1 \
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d74e58418bf1a4de29c1f945830e9e8a \
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f01cea0480c0e9abbd07196084a64451 \
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e66d6083191ac1cc804ea80e494005ee \
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b4b0f551f5c3901228e77475aa95e856 \
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4871d5c8bb0f3cc37f5f34b3126ab171 \
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3330f1ee2f4f4237fc40ac6b4b6f8099 \
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b2ce9b52ec0540bd56634045664ea2ce \
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b79a17a2ad25fe6ffc8d23c7bbf8bc0b \
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3b8096d4f5869c6856c60f53fa5f5131 \
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d1468bcd15d48374d0d59e14e4c4a6b5 \
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b7da94cc7c0f1f6791cd4312a64c225a \
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344da0793ab3a85a68b52b3bdf49929a \
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fa89b9b0cab3c7fe5b86a56de2a94686 \
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9a32d2263a6c67927ab1c237890cc222 \
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49c748441e0e3fd9b86429be3db1d025"
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DOWNLOAD_x86_64=""
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MD5SUM_x86_64=""
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REQUIRES="EMBOSS"
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MAINTAINER="Petar Petrov"
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EMAIL="ppetrov@paju.oulu.fi"
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EMAIL="petar.petrov@student.oulu.fi"
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