graphics/amide: Added (Medical Imaging Data Examiner).
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Juan M. Lasca
Willy Sudiarto Raharjo
parent
95415c0e1d
commit
8387890360
|
|
@ -0,0 +1,36 @@
|
|||
AMIDE is a competely free tool for viewing, analyzing, and registering
|
||||
volumetric medical imaging data sets. It's been written on top of GTK+,
|
||||
and runs on any system that supports this toolkit (Linux, Windows,
|
||||
Mac OS X, etc.).
|
||||
|
||||
FEATURES:
|
||||
* Abitrary orientation, thickness, and time period slice viewing of
|
||||
a data set.
|
||||
* Thick slabs can be generated by averaging (MPR), taking the
|
||||
maximum (MIP), or the minimum (MIP).
|
||||
* Multiple data sets can be loaded and viewed at once.
|
||||
* Nearest Neighbor and Trilinear interpolation functions
|
||||
* Zooming
|
||||
* Black/White,White/Black,Red/Green/Blue Temperature,
|
||||
Hot Metal/Blue/Green, Spectrum, NIH/UCLA colormaps
|
||||
* Thresholding: data sets are thresholded independently.
|
||||
* 3-dimensional ROI's can be drawn directly on the images and
|
||||
statistics can be generated for these ROI's.
|
||||
* Imports raw data files (8bit,16bit,32bit,float,etc).
|
||||
* Imports Acr/Nema 2.0, Analyze (SPM), DICOM 3.0, InterFile3.3,
|
||||
ECAT 6/7, and Gif87a/89a (using the (X)medcon/libmdc).
|
||||
* Imports most clinical DICOM files (using the DCMTK library).
|
||||
* Allows cropping and clearing regions of data sets.
|
||||
* Anisotropic filtering wizard.
|
||||
* Saves studies (ROI and Data Set data) as XML data.
|
||||
* Series of slices can be viewed.
|
||||
* Fly through movies can be generated as MPEG1 files
|
||||
* True volume rendering support with the capability of rendering
|
||||
multiple data sets at a time. Series of renderings can be saved
|
||||
as MPEG1 movies. Data sets can also be rendered as stereoscopic
|
||||
image pairs
|
||||
* Alignment of data sets is supported using fiducial markers.
|
||||
* A profile tool is included that can calculate gaussian fits and
|
||||
FWHM's of the generated line profiles.
|
||||
|
||||
|
||||
|
|
@ -0,0 +1,133 @@
|
|||
#!/bin/bash
|
||||
|
||||
# Slackware build script for amide
|
||||
|
||||
# Copyright 2023 Juan M. Lasca <juanmlasca@gmail.com>
|
||||
# All rights reserved.
|
||||
#
|
||||
# Redistribution and use of this script, with or without modification, is
|
||||
# permitted provided that the following conditions are met:
|
||||
#
|
||||
# 1. Redistributions of this script must retain the above copyright
|
||||
# notice, this list of conditions and the following disclaimer.
|
||||
#
|
||||
# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
|
||||
# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
|
||||
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
|
||||
# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
|
||||
# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
|
||||
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
|
||||
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
|
||||
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
|
||||
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
|
||||
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
|
||||
|
||||
cd $(dirname $0) ; CWD=$(pwd)
|
||||
|
||||
PRGNAM=amide
|
||||
VERSION=${VERSION:-1.0.6+20231009_c02babd}
|
||||
COMMIT=c02babd6b660a8d83c7f90eab69bbff34253923d
|
||||
BUILD=${BUILD:-1}
|
||||
TAG=${TAG:-_SBo}
|
||||
PKGTYPE=${PKGTYPE:-tgz}
|
||||
|
||||
|
||||
if [ -z "$ARCH" ]; then
|
||||
case "$( uname -m )" in
|
||||
i?86) ARCH=i586 ;;
|
||||
arm*) ARCH=arm ;;
|
||||
*) ARCH=$( uname -m ) ;;
|
||||
esac
|
||||
fi
|
||||
|
||||
if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
|
||||
echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
|
||||
exit 0
|
||||
fi
|
||||
|
||||
TMP=${TMP:-/tmp/SBo}
|
||||
PKG=$TMP/package-$PRGNAM
|
||||
OUTPUT=${OUTPUT:-/tmp}
|
||||
|
||||
if [ "$ARCH" = "i586" ]; then
|
||||
SLKCFLAGS="-O2 -march=i586 -mtune=i686"
|
||||
LIBDIRSUFFIX=""
|
||||
elif [ "$ARCH" = "i686" ]; then
|
||||
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
|
||||
LIBDIRSUFFIX=""
|
||||
elif [ "$ARCH" = "x86_64" ]; then
|
||||
SLKCFLAGS="-O2 -fPIC"
|
||||
LIBDIRSUFFIX="64"
|
||||
elif [ "$ARCH" = "aarch64" ]; then
|
||||
SLKCFLAGS="-O2 -fPIC"
|
||||
LIBDIRSUFFIX="64"
|
||||
else
|
||||
SLKCFLAGS="-O2"
|
||||
LIBDIRSUFFIX=""
|
||||
fi
|
||||
|
||||
set -e
|
||||
|
||||
rm -rf $PKG
|
||||
mkdir -p $TMP $PKG $OUTPUT
|
||||
cd $TMP
|
||||
rm -rf $PRGNAM-$COMMIT
|
||||
tar xvf $CWD/$PRGNAM-$COMMIT.tar.gz
|
||||
cd $PRGNAM-$COMMIT
|
||||
chown -R root:root .
|
||||
find -L . \
|
||||
\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
|
||||
-o -perm 511 \) -exec chmod 755 {} \; -o \
|
||||
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
|
||||
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
|
||||
|
||||
intltoolize
|
||||
libtoolize
|
||||
touch gtk-doc.make gnome-doc-utils.make
|
||||
autoreconf -i
|
||||
|
||||
CFLAGS="$SLKCFLAGS -Dg_warning=printf" \
|
||||
CXXFLAGS="$SLKCFLAGS" \
|
||||
./configure \
|
||||
--prefix=/usr \
|
||||
--libdir=/usr/lib${LIBDIRSUFFIX} \
|
||||
--sysconfdir=/etc \
|
||||
--localstatedir=/var \
|
||||
--mandir=/usr/man \
|
||||
--docdir=/usr/doc/$PRGNAM-$VERSION \
|
||||
--disable-static \
|
||||
--build=$ARCH-slackware-linux \
|
||||
--disable-gnome-vfs \
|
||||
--disable-doc \
|
||||
--disable-scrollkeeper
|
||||
|
||||
# workaround GTK+-2.0 ABI issue
|
||||
sed -i '$a\#define g_warning printf' amide_config.h;
|
||||
|
||||
make -j1
|
||||
make -j1 install DESTDIR=$PKG
|
||||
|
||||
rm -f $PKG/{,usr/}lib${LIBDIRSUFFIX}/*.la
|
||||
|
||||
find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
|
||||
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
|
||||
|
||||
find $PKG/usr/man -type f -exec gzip -9 {} \;
|
||||
for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
|
||||
|
||||
# Correct .desktop file
|
||||
sed -i '/Encoding=UTF-8/d;s/Graphics;Education;Science;MedicalSoftware;/Graphics;/' \
|
||||
$PKG/usr/share/applications/amide.desktop
|
||||
|
||||
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
|
||||
cp -a \
|
||||
RELEASE_NOTES README.md NEWS AUTHORS \
|
||||
$PKG/usr/doc/$PRGNAM-$VERSION
|
||||
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
|
||||
|
||||
mkdir -p $PKG/install
|
||||
cat $CWD/slack-desc > $PKG/install/slack-desc
|
||||
cat $CWD/doinst.sh > $PKG/install/doinst.sh
|
||||
|
||||
cd $PKG
|
||||
/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE
|
||||
|
|
@ -0,0 +1,10 @@
|
|||
PRGNAM="amide"
|
||||
VERSION="1.0.6+20231009_c02babd"
|
||||
HOMEPAGE="https://amide.sourceforge.net/"
|
||||
DOWNLOAD="https://github.com/ferdymercury/amide/archive/c02babd/amide-c02babd6b660a8d83c7f90eab69bbff34253923d.tar.gz"
|
||||
MD5SUM="650f348061896c5efcb1443bc12239bd"
|
||||
DOWNLOAD_x86_64=""
|
||||
MD5SUM_x86_64=""
|
||||
REQUIRES="libgnomecanvas xmedcon dcmtk"
|
||||
MAINTAINER="Juan M. Lasca"
|
||||
EMAIL="juanmlasca@gmail.com"
|
||||
|
|
@ -0,0 +1,4 @@
|
|||
|
||||
if [ -x /usr/bin/update-desktop-database ]; then
|
||||
/usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
|
||||
fi
|
||||
|
|
@ -0,0 +1,19 @@
|
|||
# HOW TO EDIT THIS FILE:
|
||||
# The "handy ruler" below makes it easier to edit a package description.
|
||||
# Line up the first '|' above the ':' following the base package name, and
|
||||
# the '|' on the right side marks the last column you can put a character in.
|
||||
# You must make exactly 11 lines for the formatting to be correct. It's also
|
||||
# customary to leave one space after the ':' except on otherwise blank lines.
|
||||
|
||||
|-----handy-ruler------------------------------------------------------|
|
||||
amide: amide (Amide's a Medical Imaging Data Examiner)
|
||||
amide:
|
||||
amide: AMIDE is a competely free tool for viewing, analyzing, and
|
||||
amide: registering volumetric medical imaging data sets. It's been written
|
||||
amide: on top of GTK+, and runs on any system that supports this toolkit
|
||||
amide: (Linux, Windows, Mac OS X, etc.).
|
||||
amide:
|
||||
amide:
|
||||
amide:
|
||||
amide: For more information, see: https://amide.sourceforge.net/
|
||||
amide:
|
||||
Loading…
Reference in New Issue