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academic/pysam: Use internal htslib-1.14 

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
brobr 2022-03-04 15:14:47 +00:00 committed by Willy Sudiarto Raharjo
parent 4d4bf91f6f
commit 7521abef93
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GPG Key ID: 3F617144D7238786
1 changed files with 1 additions and 6 deletions
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@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd)
PRGNAM=pysam
VERSION=${VERSION:-0.18.0}
BUILD=${BUILD:-1}
BUILD=${BUILD:-2}
TAG=${TAG:-_SBo}
PKGTYPE=${PKGTYPE:-tgz}
@ -80,11 +80,6 @@ find -L . \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
### pysam linked to htslib-1.14; SBo-htslib is at 1.14:
### for use system htslib:
export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
export HTSLIB_INCLUDE_DIR=/usr/include
#the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook
chmod 644 pysam.egg-info/*