academic/treeview: Added (Program to display phylogenetic trees)

Signed-off-by: Niels Horn <niels.horn@slackbuilds.org>

academic/treeview/README

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+TreeView is a simple program for displaying phylogenies. Some of its
+features include:
+
+- reads many different tree file formats (including NEXUS, PHYLIP, 
+  Hennig86, NONA, MEGA, and ClustalW/X)
+- supports standard the TrueType and Postscript fonts
+- supports native graphics file format for copying pictures into 
+  other applications, and for saving graphics files
+- print preview
+- can print multiple trees per page and/or one tree over more than 
+  one page
+- has drag-and-drop facility for easy opening of files
+- Web-based online help
+- tree editor
+
+For details and citation:
+Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic 
+trees on personal computers. Computer Applications in the Biosciences 
+12: 357-358. 
+
+This requires wxGTK or wxPython, available at SlackBuilds.org.

academic/treeview/References

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+Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358. 

academic/treeview/doinst.sh

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+if [ -x /usr/bin/update-desktop-database ]; then
+  /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
+fi

academic/treeview/slack-desc

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+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description.  Line
+# up the first '|' above the ':' following the base package name, and the '|'
+# on the right side marks the last column you can put a character in.  You must
+# make exactly 11 lines for the formatting to be correct.  It's also
+# customary to leave one space after the ':'.
+
+        |-----handy-ruler------------------------------------------------------|
+treeview: treeview (Program to display phylogenetic trees)
+treeview:
+treeview: TreeView provides a simple way to view the contents of a NEXUS,
+treeview: PHYLIP, Hennig86, Clustal, or other format tree file.
+treeview:
+treeview:
+treeview:
+treeview:
+treeview:
+treeview: References: /usr/doc/treeview-$VERSION/References
+treeview: Home: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/

academic/treeview/treeview.SlackBuild

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+#!/bin/sh
+
+# Slackware build script for treeview
+# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and 
+# hereby submitted to the public domain
+
+# Based on the treeview PKGBUILD from Archlinux AUR 
+# (http://aur.archlinux.org/packages.php?ID=19489). 
+# PKGBUILD submitter is abhidg and PKGBUILD maintainer 
+# is Stunts. Thank you!
+
+# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING 
+# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ 
+# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+
+PRGNAM=treeview
+VERSION=${VERSION:-0.5.1}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+SRCNAM=tv
+
+if [ -z "$ARCH" ]; then
+  case "$( uname -m )" in
+    i?86) export ARCH=i486 ;;
+    arm*) export ARCH=arm ;;
+       *) export ARCH=$( uname -m ) ;;
+  esac
+fi
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+if [ "$ARCH" = "i486" ]; then
+  SLKCFLAGS="-O2 -march=i486 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i686" ]; then
+  SLKCFLAGS="-O2 -march=i686 -mtune=i686"
+  LIBDIRSUFFIX=""
+elif [ "$ARCH" = "x86_64" ]; then
+  SLKCFLAGS="-O2 -fPIC"
+  LIBDIRSUFFIX="64"
+else
+  SLKCFLAGS="-O2"
+  LIBDIRSUFFIX=""
+fi
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $SRCNAM-$VERSION
+tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
+cd $SRCNAM-$VERSION
+chown -R root:root .
+find . \
+ \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
+ -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
+ -exec chmod 644 {} \;
+
+# The patch is from Archlinux AUR, as mentioned above. 
+# For AUR it has been taken from Debian. Thank you both!
+patch -p1 < $CWD/treeviewx_0.5.1-7.diff
+for i in ./debian/patches/*.diff; do
+patch -p1 < $i
+done
+
+# Disable SVG support. If you want it, you should build 
+# wxGTK or wxPython including svg from contrib/src/svg
+# Then, of course comment the next line.
+sed "s:USE_SVG=1:USE_SVG=0:" -i configure
+
+CFLAGS="$SLKCFLAGS" \
+CXXFLAGS="$SLKCFLAGS" \
+./configure \
+  --prefix=/usr \
+  --libdir=/usr/lib${LIBDIRSUFFIX} \
+  --sysconfdir=/etc \
+  --localstatedir=/var \
+  --mandir=/usr/man \
+  --build=$ARCH-slackware-linux
+
+make
+make install DESTDIR=$PKG
+
+find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
+  | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
+
+mkdir -p $PKG/usr/share/{applications,pixmaps}
+cp $CWD/tv.desktop $PKG/usr/share/applications
+cp $CWD/tv.png $PKG/usr/share/pixmaps
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a \
+  COPYING INSTALL \
+  $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+cat $CWD/doinst.sh > $PKG/install/doinst.sh
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}

academic/treeview/treeview.info

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+PRGNAM="treeview"
+VERSION="0.5.1"
+HOMEPAGE="http://taxonomy.zoology.gla.ac.uk/rod/treeview.html"
+DOWNLOAD="http://darwin.zoology.gla.ac.uk/%7Erpage/treeviewx/download/0.5/tv-0.5.1.tar.gz"
+MD5SUM="07e1ed8873c5f19ded7294668233bae1"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+MAINTAINER="Petar Petrov"
+EMAIL="ppetrov@paju.oulu.fi"
+APPROVED="Niels Horn"

academic/treeview/tv.desktop

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+[Desktop Entry]
+Categories=Education;
+Exec=tv
+Icon=tv.png
+Name=TreeView
+StartupNotify=false
+Type=Application