academic/paml: Updated for version 4.9e.

Signed-off-by: David Spencer <idlemoor@slackbuilds.org>

academic/paml/paml.SlackBuild

@@ -2,7 +2,7 @@
 
 # Slackware build script for paml
 
-# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
+# Copyright 2013-2017 Petar Petrov slackalaxy@gmail.com
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -23,7 +23,7 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=paml
-VERSION=${VERSION:-4.9c}
+VERSION=${VERSION:-4.9e}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
@@ -35,8 +35,6 @@ if [ -z "$ARCH" ]; then
   esac
 fi
 
-MAINVER=4.9c
-
 CWD=$(pwd)
 TMP=${TMP:-/tmp/SBo}
 PKG=$TMP/package-$PRGNAM
@@ -61,9 +59,9 @@ set -e
 rm -rf $PKG
 mkdir -p $TMP $PKG $OUTPUT
 cd $TMP
-rm -rf ${PRGNAM}${MAINVER}
+rm -rf ${PRGNAM}${VERSION}
 tar xvf $CWD/${PRGNAM}${VERSION}.tgz
-cd ${PRGNAM}${MAINVER}
+cd ${PRGNAM}${VERSION}
 chown -R root:root .
 find -L . \
  \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
@@ -124,7 +122,7 @@ cd ..
 cc -o multiruns $SLKCFLAGS multiruns.c -lm
 install -D -m755 multiruns 	$PKG/usr/libexec/$PRGNAM/multiruns
 
-cd $TMP/${PRGNAM}${MAINVER}
+cd $TMP/${PRGNAM}${VERSION}
 
 # Include sample system files and example experimental data.
 mkdir -p $PKG/usr/share/$PRGNAM/{aa,codon,ctl,dat,nuc,paup,trees}

academic/paml/paml.info

@@ -1,10 +1,10 @@
 PRGNAM="paml"
-VERSION="4.9c"
+VERSION="4.9e"
 HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
-DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.9c.tgz \
-	http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf"
-MD5SUM="7c3638fdf19ec44b7b2636477d893de6 \
-	29c851d887eea56b949c01ab42cc48fb"
+DOWNLOAD="http://abacus.gene.ucl.ac.uk/software/paml4.9e.tgz \
+          http://abacus.gene.ucl.ac.uk/software/MCMCtree.Tutorials.pdf"
+MD5SUM="27930055f729f16f84ceb44c0f1581b9 \
+        29c851d887eea56b949c01ab42cc48fb"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 REQUIRES=""

academic/paml/slack-desc

@@ -16,4 +16,4 @@ paml: reconstructed trees using other programs such as PAUP*, PHYLIP,
 paml: MOLPHY, PhyML, RaxML, etc.
 paml:
 paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html
-paml: References: /usr/doc/paml-4.9c/References
+paml: References: /usr/doc/paml-4.9e/References