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academic/vcftools: Updated for version 0.1.14_33_g1d27c24. 

Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
This commit is contained in:
Petar Petrov 2017-04-16 23:52:18 +01:00 committed by Willy Sudiarto Raharjo
parent 7ab4740889
commit 4f792d3ee4
4 changed files with 15 additions and 15 deletions
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8
academic/vcftools/README
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@ -11,8 +11,8 @@ compatibility with older versions.
If you make use of VCFtools in your research, the authors would
appreciate a citation of the following paper:
The Variant Call Format and VCFtools,
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers,
Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter,
Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin
The Variant Call Format and VCFtools,
Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers,
Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter,
Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin
and 1000 Genomes Project Analysis Group, Bioinformatics, 2011

2
academic/vcftools/slack-desc
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@ -15,5 +15,5 @@ vcftools: VCF files: validating, merging, comparing and calculate some
vcftools: basic population genetic statistics.
vcftools:
vcftools: Home: http://vcftools.sourceforge.net/
vcftools: References: /usr/doc/vcftools-0.1.14_14_g2543f81/References
vcftools: References: /usr/doc/vcftools-0.1.14_33_g1d27c24/References
vcftools:

14
academic/vcftools/vcftools.SlackBuild
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@ -2,7 +2,7 @@
# Slackware build script for vcftools
# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# Copyright 2013-2017 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,15 +23,15 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=vcftools
VERSION=${VERSION:-0.1.14_14_g2543f81}
VERSION=${VERSION:-0.1.14_33_g1d27c24}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
GITVER=2543f812d45755cbe46a1d5d6bbd16da6a55b0c5
GITVER=1d27c245276cc9b10c4b20e1fedc5e4adfcc0123
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
i?86) ARCH=i486 ;;
i?86) ARCH=i586 ;;
arm*) ARCH=arm ;;
*) ARCH=$( uname -m ) ;;
esac
@ -42,8 +42,8 @@ TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
if [ "$ARCH" = "i486" ]; then
SLKCFLAGS="-O2 -march=i486 -mtune=i686"
if [ "$ARCH" = "i586" ]; then
SLKCFLAGS="-O2 -march=i586 -mtune=i686"
LIBDIRSUFFIX=""
elif [ "$ARCH" = "i686" ]; then
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
@ -83,7 +83,7 @@ CPPFLAGS="$SLKCFLAGS" \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--build=$ARCH-slackware-linux
make
make DESTDIR=$PKG install
make DESTDIR=$PKG install PMDIR=share/perl5/vendor_perl
# Copy examples
mkdir -p $PKG/usr/share/$PRGNAM

6
academic/vcftools/vcftools.info
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@ -1,8 +1,8 @@
PRGNAM="vcftools"
VERSION="0.1.14_14_g2543f81"
VERSION="0.1.14_33_g1d27c24"
HOMEPAGE="https://vcftools.github.io/"
DOWNLOAD="https://github.com/vcftools/vcftools/archive/2543f81/vcftools-2543f812d45755cbe46a1d5d6bbd16da6a55b0c5.tar.gz"
MD5SUM="9df1c409022985ee1ddd922fbf059d73"
DOWNLOAD="https://github.com/vcftools/vcftools/archive/1d27c24/vcftools-1d27c245276cc9b10c4b20e1fedc5e4adfcc0123.tar.gz"
MD5SUM="5220a370d011962a6023a2e696d91e14"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="tabix"