academic/meme-db-motif: Added (MEME Suite motif databases)
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
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Motif Databases (updated 28 Oct 2019) to be used with MEME Suite:
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Eukaryote DNA (13 Databases)
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Prokaryote DNA (4 Databases)
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Methylcytosine DNA (1 Databases)
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JASPAR (NON-REDUNDANT) DNA (21 Databases)
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JASPAR (REDUNDANT) DNA (21 Databases)
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JASPAR COLLECTIONS DNA (5 Databases)
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TFBSshape DNA (3 Databases)
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CIS-BP Single Species DNA (321 Databases)
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ARABIDOPSIS (Arabidopsis thaliana) DNA (2 Databases)
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ECOLI (Escherichia coli) DNA (2 Databases)
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FLY (Drosophila melanogaster) DNA (6 Databases)
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HUMAN (Homo sapiens) DNA (4 Databases)
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MALARIA (Plasmodia falciparum) DNA (1 Databases)
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MOUSE (Mus musculus) DNA (5 Databases)
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WORM (Caenorhabditis elegans) DNA (1 Databases)
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YEAST (Saccharomyces_cerevisiae) DNA (6 Databases)
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CISBP-RNA Single Species RNA (268 Databases)
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CISBP-RNA Single Species RNA (DNA-encoded) (268 Databases)
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RNA (25 Databases)
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RNA (DNA-encoded) (25 Databases)
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miRBase Single Species microRNA (223 Databases)
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miRBase Single Species microRNA (DNA-encoded) (223 Databases)
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Protein Motifs (2 Databases)
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Note!
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The unarchived size of this is ~140 MB
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#!/bin/sh
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# Slackware build script for meme-db-motif
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# Copyright 2020 Petar Petrov slackalaxy@gmail.com
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# All rights reserved.
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#
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# Redistribution and use of this script, with or without modification, is
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# permitted provided that the following conditions are met:
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#
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# 1. Redistributions of this script must retain the above copyright
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# notice, this list of conditions and the following disclaimer.
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#
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# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
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# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
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# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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PRGNAM=meme-db-motif
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VERSION=${VERSION:-12.19}
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BUILD=${BUILD:-1}
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TAG=${TAG:-_SBo}
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SRCNAM=motif_databases
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ARCH=noarch
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CWD=$(pwd)
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TMP=${TMP:-/tmp/SBo}
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PKG=$TMP/package-$PRGNAM
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OUTPUT=${OUTPUT:-/tmp}
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set -e
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rm -rf $PKG
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mkdir -p $TMP $PKG $OUTPUT
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cd $PKG
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# Extract directly in the $PKG folder
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mkdir -p var/lib/meme-suite
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cd var/lib/meme-suite
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tar xvf $CWD/${SRCNAM}.${VERSION}.tgz
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cd $SRCNAM
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chown -R root:root .
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find -L . \
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\( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
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-o -perm 511 \) -exec chmod 755 {} \; -o \
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\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
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-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
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mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
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cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
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mkdir -p $PKG/install
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cat $CWD/slack-desc > $PKG/install/slack-desc
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cd $PKG
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/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
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PRGNAM="meme-db-motif"
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VERSION="12.19"
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HOMEPAGE="http://meme-suite.org/db/motifs"
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DOWNLOAD="http://meme-suite.org/meme-software/Databases/motifs/motif_databases.12.19.tgz"
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MD5SUM="f5ffcaecc07570ee19dba20b82d7bd73"
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DOWNLOAD_x86_64=""
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MD5SUM_x86_64=""
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REQUIRES=""
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MAINTAINER="Petar Petrov"
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EMAIL="slackalaxy@gmail.com"
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# HOW TO EDIT THIS FILE:
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# The "handy ruler" below makes it easier to edit a package description.
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# Line up the first '|' above the ':' following the base package name, and
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# the '|' on the right side marks the last column you can put a character in.
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# You must make exactly 11 lines for the formatting to be correct. It's also
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# customary to leave one space after the ':' except on otherwise blank lines.
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|-----handy-ruler------------------------------------------------------|
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meme-db-motif: meme-db-motif (MEME Suite motif databases)
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meme-db-motif:
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meme-db-motif: Motif Databases to be used with MEME Suite.
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meme-db-motif:
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meme-db-motif:
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meme-db-motif:
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meme-db-motif:
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meme-db-motif:
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meme-db-motif:
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meme-db-motif:
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meme-db-motif:
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