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academic/seaview: Updated for version 4.5.3.4. 

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Petar Petrov 2015-02-05 06:11:56 +07:00 committed by Willy Sudiarto Raharjo
parent 8a395ca7e4
commit 19d870803c
4 changed files with 17 additions and 13 deletions
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4
academic/seaview/README
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@ -13,10 +13,10 @@ sequence alignment and molecular phylogeny. Important features are:
evolutionarily conserved sites.
4) SeaView computes phylogenetic trees by
a) parsimony, using PHYLIP's dnapars/protpars algorithm,
a) parsimony, using PHYLIP's dnapars/protpars algorithm
b) distance, with NJ or BioNJ algorithms on a variety of
evolutionary distances,
c) maximum likelihood, driving program PhyML 3.0.
c) maximum likelihood, driving program PhyML 3.1.
5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or
PostScript files.

16
academic/seaview/seaview.SlackBuild
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@ -2,7 +2,7 @@
# Slackware build script for seaview
# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi
# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,9 +23,10 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# Thanks to Niels Horn for correcting the CFLAGS.
# Thanks to developer Dr. Manolo Gouy for all his help.
PRGNAM=seaview
VERSION=${VERSION:-4.5.2}
VERSION=${VERSION:-4.5.3.4}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@ -74,12 +75,15 @@ find -L . \
# Use our CFLAGS
sed -i "/^CFLAGS/s/=/+=/" Makefile
# Enable PDF output. If you do not want it, comment out the next two
# lines. Then you do not need to install PDFlib-Lite.
sed -i "7 c PDF_INC = /usr/include" Makefile
sed -i "8 c PDF_LIB = /usr/lib${LIBDIRSUFFIX}" Makefile
# Point to fltk13 during compilation and make the produced executable
# aware of the libraries' custom location
sed -i "14 c FLTK = /usr/include/fltk13" Makefile
sed -i "s:#IFLTK:IFLTK:" Makefile
sed -i "18 c LFLTK = -L/usr/lib${LIBDIRSUFFIX}/fltk13" Makefile
sed -i "29 a LDFLAGS= -Wl,-ldl,--rpath,/usr/lib${LIBDIRSUFFIX}/fltk13" Makefile
sed -i "11 c FLTK = /usr/include/fltk13" Makefile
sed -i "15 c CONFIG = /usr/bin/fltk13-config" Makefile
# Point to the correct documentation path and phyml executable name
sed -i "s:#HELPFILE:HELPFILE:" Makefile

8
academic/seaview/seaview.info
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@ -1,10 +1,10 @@
PRGNAM="seaview"
VERSION="4.5.2"
VERSION="4.5.3.4"
HOMEPAGE="http://doua.prabi.fr/software/seaview"
DOWNLOAD="http://doua.prabi.fr/software/seaview_data/archive/seaview_4.5.2.tar.gz"
MD5SUM="4be7e3afb53decc9f9bfb425a4a92664"
DOWNLOAD="http://doua.prabi.fr/software/seaview_data/archive/seaview_4.5.3.4.tar.gz"
MD5SUM="a223849a96b698a6c60b77d2e2f1b877"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="Gblocks PhyML clustalo fltk13 muscle"
REQUIRES="fltk13 PDFlib-Lite Gblocks PhyML clustalo muscle"
MAINTAINER="Petar Petrov"
EMAIL="petar.petrov@student.oulu.fi"

2
academic/seaview/slack-desc
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@ -11,7 +11,7 @@ seaview:
seaview: SeaView is a multiplatform, graphical user interface for multiple
seaview: sequence alignment and molecular phylogeny.
seaview:
seaview: References: /usr/doc/seaview-4.5.1/References
seaview: References: /usr/doc/seaview-4.5.3.4/References
seaview: Home: http://pbil.univ-lyon1.fr/software/seaview.html
seaview:
seaview: