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academic/RepeatMasker: Updated for version 4.1.0. 

Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
This commit is contained in:
Petar Petrov 2020-01-05 18:28:32 -06:00 committed by Willy Sudiarto Raharjo
parent 9a635a04ba
commit 15f3312a7e
No known key found for this signature in database
GPG Key ID: 887B8374D7333381
3 changed files with 8 additions and 9 deletions
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2
academic/RepeatMasker/README
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@ -20,7 +20,7 @@ supports Dfam (profile HMM library derived from Repbase sequences) and
Repbase, a service of the Genetic Information Research Institute.
WARNING!
Due to the bundled databases, the installed size of this is 1.8 GiB!
Due to the bundled databases, the installed size of this is 2.1 GB!
NOTE!
The package is installed in /opt. After install go fo /opt/RepeatMasker

9
academic/RepeatMasker/RepeatMasker.SlackBuild
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@ -2,7 +2,7 @@
# Slackware build script for RepeatMasker
# Copyright 2018-2019 Petar Petrov slackalaxy@gmail.com
# Copyright 2018-2020 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@ -23,11 +23,10 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=RepeatMasker
VERSION=${VERSION:-4.0.9_p2}
VERSION=${VERSION:-4.1.0}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
SRCVER=${SRCVER:-4-0-9-p2}
ARCH=noarch
CWD=$(pwd)
@ -42,7 +41,7 @@ rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf $PRGNAM
tar xvf $CWD/$PRGNAM-open-$SRCVER.tar.gz
tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
cd $PRGNAM
chown -R root:root .
find -L . \
@ -67,7 +66,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
# Better just copy these and not move them from their original dir
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \
bluegrad.jpg daterepeats.help HTMLAnnotHeader.html INSTALL LICENSE README.md repeatmasker.help \
bluegrad.jpg daterepeats.help HTMLAnnotHeader.html INSTALL LICENSE README.md repeatmasker.help ReleaseNotes \
$PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
cat $CWD/README.SLACKWARE > $PKG/usr/doc/$PRGNAM-$VERSION/README.SLACKWARE

6
academic/RepeatMasker/RepeatMasker.info
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@ -1,8 +1,8 @@
PRGNAM="RepeatMasker"
VERSION="4.0.9_p2"
VERSION="4.1.0"
HOMEPAGE="http://www.repeatmasker.org/"
DOWNLOAD="http://www.repeatmasker.org/RepeatMasker-open-4-0-9-p2.tar.gz"
MD5SUM="6e957630d698422245682701de2ce756"
DOWNLOAD="http://www.repeatmasker.org/RepeatMasker-4.1.0.tar.gz"
MD5SUM="936894df2b8291f42afce22a5793b4bf"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="perl-Text-Soundex trfind HMMER ncbi-rmblastn"