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academic/pysam: Updated for version 0.16.0.1. 

Signed-off-by: Dave Woodfall <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
This commit is contained in:
Rob van Nues 2020-10-09 02:12:14 +01:00 committed by Willy Sudiarto Raharjo
parent 9abb545911
commit 0074529fa7
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GPG Key ID: 3F617144D7238786
2 changed files with 5 additions and 5 deletions
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8
academic/pysam/pysam.SlackBuild
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@ -25,7 +25,7 @@
PRGNAM=pysam
VERSION=${VERSION:-0.16.0.1}
BUILD=${BUILD:-1}
BUILD=${BUILD:-3}
TAG=${TAG:-_SBo}
#set which python version to install it for
@ -75,10 +75,10 @@ find -L . \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
### pysam now linked to htslib-1.10 so this can be done again:
### pysam linked to htslib-1.10; SBo-htslib is at 1.11:
##use system htslib:
export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
export HTSLIB_INCLUDE_DIR=/usr/include
#export HTSLIB_LIBRARY_DIR=/usr/lib$LIBDIRSUFFIX
#export HTSLIB_INCLUDE_DIR=/usr/include
#the source does not allow 'read' to 'other', which could cause a problem on reloading a Jupyter-notebook
chmod 644 pysam.egg-info/*

2
academic/pysam/pysam.info
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@ -5,6 +5,6 @@ DOWNLOAD="https://pypi.python.org/packages/source/p/pysam/pysam-0.16.0.1.tar.gz"
MD5SUM="5b4b73431f2511727f4fef43a67b392e"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="python3-Cython htslib"
REQUIRES="python3-Cython"
MAINTAINER="Rob van Nues"
EMAIL="sborg63@disroot.org"