2013-01-13 17:45:08 +08:00
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CAP3: A DNA sequence assembly program.
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CAP3 if the third generation of the CAP sequence assembly program. The
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2020-10-12 04:06:46 +08:00
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program has a capability to clip 5' and 3' low-quality regions
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of reads. It uses base quality values in computation of overlaps
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between reads, construction of multiple sequence alignments of
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reads, and generation of consensus sequences. The program also uses
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forward-reverse constraints to correct assembly errors and link
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contigs.
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2013-01-13 17:45:08 +08:00
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This just repackages the binaries provided from upstream.
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If you use CAP3 in any published work, please cite:
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Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program.
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Genome Res., 9, 868-877.
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2022-02-27 22:23:45 +08:00
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2022-08-06 03:43:24 +08:00
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*NOTE*
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The downloads are available here:
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https://faculty.sites.iastate.edu/xqhuang/cap3-assembly-program
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Sources are also hosted by the maintainer to ease automatic download.
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