Commit Graph

128 Commits

Author SHA1 Message Date
Joel Nothman 0a0bf2478e Revert "ENH: Add indicator features to imputer output (#6607)" (#7292)
This reverts commit 18396be8cb as it was
merged when incomplete.
2016-08-30 21:28:01 +10:00
Andreas Mueller 002ff1237a fix some warnings in test outputs. 2016-08-27 17:02:22 +02:00
Caio Oliveira 19d6d925ed [MRG+1] Fix for "_transform_selected" not copying when "selected='all'" (#7201)
* fixes issue scikit-learn/scikit-learn#7194

* Added test

* Making `selected='all'` explicit on test

* Updated whats_new.rst

* Fixed typo on `whats_new.rst`
2016-08-18 11:47:00 +02:00
Konstantin Podshumok f893565773 [MRG+2] ENH: (minor) add quantile_low/high parameters to robust scaler (#5929)
* add quantile_low/high parameters to robust scaler

add versionadded tags

* robust scaler: add parameter for quantile_range, check its validity

* robust scaler: simplify params validations

fix typo in docstrings of RobustScaler

* preprocessing.data fix some lines > 80 columns

* add whatsnew for robust scaler quantile_range param

add missing url link in whatsnew
2016-08-13 10:32:16 +02:00
Gael Varoquaux 1dbc069cab TST: Speed up: cv=2
This is a smoke test. Hence there is no point having cv=4
2016-06-22 15:39:53 +02:00
John Moeller 055bc4c004 pep8 2016-06-22 02:10:41 -06:00
John Moeller 13f68c93b8 Simplifying imports and test 2016-06-17 17:44:51 -06:00
John Moeller cc9dbac37f Adding test for PR #6900 2016-06-17 17:28:36 -06:00
Thierry Guillemot 78a674875e Correct the deprecation of the random_integers numpy function. (#6712) 2016-04-26 16:08:48 +02:00
Maniteja Nandana 18396be8cb ENH: Add indicator features to imputer output 2016-04-14 12:21:16 +05:30
ningchi 1d487fb550 [MRG+1] issue #6532 Add `inverse_transform` function (#6570)
* [MRG+1] #6532 Add inverse_func argument to FunctionTransformer


* modify test:inverse_func is not true inverse
2016-04-12 01:26:30 -04:00
YenChenLin 08e1db4cd3 Test normalize function in data.py 2016-03-26 10:38:29 +08:00
dsquareindia e9492b7ec2 LabelBinarizer single label case now works for sparse and dense case 2016-03-21 10:43:56 +05:30
Andreas Mueller 8fb928d644 fixed doc for powers, added test 2016-02-24 17:08:15 -05:00
Andreas Mueller 897f8b6cc6 don't do ^1 2016-02-22 15:09:47 -05:00
Andreas Mueller 3fa684db0e add get_feature_names to PolynomialFeatures 2016-02-19 15:52:55 -05:00
dsquareindia 74475bc929 LabelEncoder now raises error for 0-D arrays 2016-01-26 01:34:26 +05:30
Gael Varoquaux 317dea8a05 Merge pull request #6005 from seales/SpellingFix
[MRG+1] General spelling fixes
2016-01-04 13:42:20 +01:00
Brian McFee 318b93d2ae Implemented keyword arguments in FunctionTransformer 2015-12-19 23:00:35 -05:00
seales 0485ada58b General spelling fixes 2015-12-16 09:46:42 -08:00
MechCoder 6e87813550 Scaling a sparse matrix along axis 0 should accept a csc by default 2015-11-11 14:21:49 -05:00
Andreas Mueller de3a527905 Merge pull request #5692 from amueller/skip_32_bit_tests
[MRG] Skip 32 bit tests that fail, skip doctests on 32bit
2015-11-05 10:33:33 -05:00
Andreas Mueller c55dc89902 Merge pull request #5695 from amueller/doc_fixes
[MRG] DOC some fixes to the doc build.
2015-11-03 15:24:56 -05:00
Andreas Mueller e2eba1ffbc Merge pull request #5688 from amueller/robust_scaler_1column_fix
[MRG+2] fix 1 sparse row scaling in robust scaler
2015-11-03 14:06:26 -05:00
Andreas Mueller 61df16e0e9 fix 1 sparse row scaling in robust scaler 2015-11-03 14:03:09 -05:00
Andreas Mueller 2653833a07 DOC some fixes to the doc build. 2015-11-03 12:23:23 -05:00
Andreas Mueller 776e53b127 skip unstable tests on 32bit platform 2015-11-02 15:21:22 -05:00
trevorstephens 89f8a514c3 OneHotEncoder warn fix
add regression test
2015-11-02 11:04:00 -08:00
Graham Clenaghan f69f895eee remove _balance_weights 2015-10-23 23:18:29 -07:00
Raghav R V 3f8743f47b Main Commits - Major
--------------------

* ENH Reogranize classes/fn from grid_search into search.py
* ENH Reogranize classes/fn from cross_validation into split.py
* ENH Reogranize cls/fn from cross_validation/learning_curve into validate.py

* MAINT Merge _check_cv into check_cv inside the model_selection module
* MAINT Update all the imports to point to the model_selection module
* FIX use iter_cv to iterate throught the new style/old style cv objs
* TST Add tests for the new model_selection members
* ENH Wrap the old-style cv obj/iterables instead of using iter_cv

* ENH Use scipy's binomial coefficient function comb for calucation of nCk
* ENH Few enhancements to the split module
* ENH Improve check_cv input validation and docstring
* MAINT _get_test_folds(X, y, labels) --> _get_test_folds(labels)
* TST if 1d arrays for X introduce any errors
* ENH use 1d X arrays for all tests;
* ENH X_10 --> X (global var)

Minor
-----

* ENH _PartitionIterator --> _BaseCrossValidator;
* ENH CVIterator --> CVIterableWrapper
* TST Import the old SKF locally
* FIX/TST Clean up the split module's tests.
* DOC Improve documentation of the cv parameter
* COSMIT consistently hyphenate cross-validation/cross-validator
* TST Calculate n_samples from X
* COSMIT Use separate lines for each import.
* COSMIT cross_validation_generator --> cross_validator

Commits merged manually
-----------------------

* FIX Document the random_state attribute in RandomSearchCV
* MAINT Use check_cv instead of _check_cv
* ENH refactor OVO decision function, use it in SVC for sklearn-like
  decision_function shape
* FIX avoid memory cost when sampling from large parameter grids

ENH Major to Minor incremental enhancements to the model_selection

Squashed commit messages - (For reference)

Major
-----

* ENH p --> n_labels
* FIX *ShuffleSplit: all float/invalid type errors at init and int error at split
* FIX make PredefinedSplit accept test_folds in constructor; Cleanup docstrings
* ENH+TST KFold: make rng to be generated at every split call for reproducibility
* FIX/MAINT KFold: make shuffle a public attr
* FIX Make CVIterableWrapper private.
* FIX reuse len_cv instead of recalculating it
* FIX Prevent adding *SearchCV estimators from the old grid_search module
* re-FIX In all_estimators: the sorting to use only the 1st item (name)
    To avoid collision between the old and the new GridSearch classes.
* FIX test_validate.py: Use 2D X (1D X is being detected as a single sample)
* MAINT validate.py --> validation.py
* MAINT make the submodules private
* MAINT Support old cv/gs/lc until 0.19
* FIX/MAINT n_splits --> get_n_splits
* FIX/TST test_logistic.py/test_ovr_multinomial_iris:
    pass predefined folds as an iterable
* MAINT expose BaseCrossValidator
* Update the model_selection module with changes from master
  - From #5161
  -  - MAINT remove redundant p variable
  -  - Add check for sparse prediction in cross_val_predict
  - From #5201 - DOC improve random_state param doc
  - From #5190 - LabelKFold and test
  - From #4583 - LabelShuffleSplit and tests
  - From #5300 - shuffle the `labels` not the `indxs` in LabelKFold + tests
  - From #5378 - Make the GridSearchCV docs more accurate.
  - From #5458 - Remove shuffle from LabelKFold
  - From #5466(#4270) - Gaussian Process by Jan Metzen
  - From #4826 - Move custom error / warnings into sklearn.exception

Minor
-----

* ENH Make the KFold shuffling test stronger
* FIX/DOC Use the higher level model_selection module as ref
* DOC in check_cv "y : array-like, optional"
* DOC a supervised learning problem --> supervised learning problems
* DOC cross-validators --> cross-validation strategies
* DOC Correct Olivier Grisel's name ;)
* MINOR/FIX cv_indices --> kfold
* FIX/DOC Align the 'See also' section of the new KFold, LeaveOneOut
* TST/FIX imports on separate lines
* FIX use __class__ instead of classmethod
* TST/FIX import directly from model_selection
* COSMIT Relocate the random_state documentation
* COSMIT remove pass
* MAINT Remove deprecation warnings from old tests
* FIX correct import at test_split
* FIX/MAINT Move P_sparse, X, y defns to top; rm unused W_sparse, X_sparse
* FIX random state to avoid doctest failure
* TST n_splits and split wrapping of _CVIterableWrapper
* FIX/MAINT Use multilabel indicator matrix directly
* TST/DOC clarify why we conflate classes 0 and 1
* DOC add comment that this was taken from BaseEstimator
* FIX use of labels is not needed in stratified k fold
* Fix cross_validation reference
* Fix the labels param doc

FIX/DOC/MAINT Addressing the review comments by Arnaud and Andy

COSMIT Sort the members alphabetically
COSMIT len_cv --> n_splits
COSMIT Merge 2 if; FIX Use kwargs
DOC Add my name to the authors :D
DOC make labels parameter consistent
FIX Remove hack for boolean indices; + COSMIT idx --> indices; DOC Add Returns
COSMIT preds --> predictions
DOC Add Returns and neatly arrange X, y, labels
FIX idx(s)/ind(s)--> indice(s)
COSMIT Merge if and else to elif
COSMIT n --> n_samples
COSMIT Use bincount only once
COSMIT cls --> class_i / class_i (ith class indices) -->
perm_indices_class_i

FIX/ENH/TST Addressing the final reviews

COSMIT c --> count
FIX/TST make check_cv raise ValueError for string cv value
TST nested cv (gs inside cross_val_score) works for diff cvs
FIX/ENH Raise ValueError when labels is None for label based cvs;
TST if labels is being passed correctly to the cv and that the
ValueError is being propagated to the cross_val_score/predict and grid
search
FIX pass labels to cross_val_score
FIX use make_classification
DOC Add Returns; COSMIT Remove scaffolding
TST add a test to check the _build_repr helper
REVERT the old GS/RS should also be tested by the common tests.
ENH Add a tuple of all/label based CVS
FIX raise VE even at get_n_splits if labels is None
FIX Fabian's comments
PEP8
2015-10-23 17:28:08 +02:00
Olivier Grisel 718a7df4c5 Merge pull request #5449 from Jeffrey04/5433-MaxAbsScaler-1-row-csr-fix
[MRG + 1] max abs scaler 1 row csr fix
2015-10-21 11:42:27 +02:00
Raghav R V e3afc0e8c9 MAINT move custom error/warning classes into sklearn.exceptions
ENH NonBLASDotWarning -> EfficiencyWarning; Improve error message
DOC Add exceptions module to modules/classes.rst
MAINT Move ConvergenceWarning, UndefinedMetricWarning et al into exceptions
MAINT Remove ChangedBehaviorWarning from base
DOC/FIX Improve DataConversionWarning's docstring
2015-10-19 22:35:35 +02:00
Jeffrey04 2571158168 add test for inverse_transform 2015-10-19 23:29:09 +08:00
Jeffrey04 658129ac5b updated test with tips from @giorgiop 2015-10-19 23:10:41 +08:00
Jeffrey04 e7a3675eaf the test to reflect issue #5433 2015-10-19 19:29:00 +08:00
giorgiop c7b1a6ebc3 BUG: reset internal state of scaler before fitting 2015-10-16 17:28:40 +02:00
Loic Esteve 47f19e9692 MAINT add safe_{median|mean} for np 1.10.1 2015-10-15 18:21:52 +02:00
Raghav R V 4f4c3598e6 FIX dtypes to conform to the stricter type cast rules of numpy 1.10
FIX set copy to (copy & whiten).

FIX/DOC Use float outputs for doctest
2015-10-15 18:21:51 +02:00
giorgiop 6a5a2f7960 partial_fit for scalers 2015-10-13 11:37:00 +02:00
Vighnesh Birodkar 2f099334f9 MAINT deprecate 1d input arrays for all estimators
Passing 1D arrays to check_array, without setting `ensure_2d` to false now
raises a deprecation warning before reshaping it. This will later throw an
error.

All Scaler classes also throw warnings when 1D arrays are passed.

All unit tests/doctests are modified to ensure that no 1D arrays are passed,
except in explicit 1D array tests where the warnings have been silenced.

Additional tests are also included which check for different 1D array cases.

2D array tests with one samples and one features are also added and where
they failed, `check_array` call has been modified to give a more useful error
message
2015-09-09 15:49:58 +02:00
Raghav R V 664d78eb7c MAINT Remove support for the deprecated sequence of sequences
MAINT Remove sequence of sequence support from datasets
MAINT Remove return_indicator param
MAINT Remove multilabel-seq test in OVR
MAINT Remove multilable-seq test in check_cv
MAINT Remove multilabel seq test in label_binarizer
TST type_of_target returns "unknown" for multilabel-sequence types
TST _check_targets should raise a ValueError
DOC show multilabel indicator as an example; remove return_indicator param
DOC use consistent lower case y for target
2015-08-11 22:26:44 +05:30
Lars Buitinck b09afb08be DOC/MAINT final touches to FunctionTransformer
* copyedit doc
* give the module an underscore (we should do this to all private modules...)
* use public import path in test
* change all logs to log1p to prevent warning in test and because it's
  genuinely useful for frequency data
* what's new
2015-08-03 22:12:19 +02:00
Joe Jevnik ba44e7bcc3 COMPAT: Makes test_function_transformer py2 compatible. 2015-08-03 11:45:16 -04:00
Andreas Mueller 9d14f7352e ENH: Renames CallableTransformer -> FunctionTransformer.
Makes `pass_y` an argument to FunctionTransformer to indicate that the
labels should be passed to the wrapped function.
2015-08-03 11:45:16 -04:00
Joe Jevnik cb0916c440 ENH: Adds CallableTransformer
CallableTransformer allows a user to convert a standard python callable
into a transformer for use in a Pipeline.
2015-08-03 11:45:16 -04:00
Alexandre Gramfort 7fd2206f4f Merge pull request #4960 from mkrump/lb_encoder
[MRG + 1] Don't allow unseen values for inverse transform
2015-07-28 22:22:56 +02:00
Matt Krump 06f16e2634 Added test 2015-07-11 17:15:33 -05:00
Thomas Unterthiner 26fbfe6f2e ENH add minmax_scale 2015-07-01 23:27:35 +02:00
Thomas Unterthiner ab734b7a39 ENH add MaxAbsScaler 2015-06-11 16:08:17 +02:00
Andreas Mueller 0b07536990 Merge pull request #4125 from untom/RobustScaler
[MRG + 2] ENH RobustScaler
2015-05-26 18:02:41 -04:00