5db2adf93c
MAINT Removed deprecated stuff.
2015-10-21 10:24:23 +02:00
e3afc0e8c9
MAINT move custom error/warning classes into sklearn.exceptions
...
ENH NonBLASDotWarning -> EfficiencyWarning; Improve error message
DOC Add exceptions module to modules/classes.rst
MAINT Move ConvergenceWarning, UndefinedMetricWarning et al into exceptions
MAINT Remove ChangedBehaviorWarning from base
DOC/FIX Improve DataConversionWarning's docstring
2015-10-19 22:35:35 +02:00
a87011262a
FIX precision to float64 across the codebase
2015-10-16 11:20:29 +02:00
c805fbc79b
Refactor tests
2015-10-10 22:05:40 -04:00
5a0db1717a
1. Added parameter prefit to pass in a fitted estimator.
...
2. Use assert_warns instead of catch_warnings
3. Remove depracation warnings in common tests.
2015-10-09 01:57:36 -04:00
acf5f160a8
Merge SelectFromModel and L1-selection examples
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Add test to check the threshold can be set without refitting
2015-10-05 11:25:07 -04:00
2ee718cc75
Add narrative docs and fix examples
2015-10-05 11:25:06 -04:00
10176d9897
Now a fitted estimator can be passed to SelectFromModel
2015-10-05 11:25:06 -04:00
3d41053d67
Minor doc changes and removed _set_threshold and _set_importances
2015-10-05 11:25:06 -04:00
9cee0d95f8
Added example to depict feature selction using SelectFromModel and Lasso
2015-10-05 11:24:02 -04:00
459cb9ba3d
Remove warm start
2015-10-05 11:19:57 -04:00
8a28ea8169
fix test failures
2015-10-05 11:19:57 -04:00
c438f78996
Implemented SelectFromModel meta-transformer
2015-10-05 11:19:57 -04:00
882c346abd
DOC Make cv documentation consistent across our codebase
2015-09-10 09:15:13 +05:30
2f099334f9
MAINT deprecate 1d input arrays for all estimators
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Passing 1D arrays to check_array, without setting `ensure_2d` to false now
raises a deprecation warning before reshaping it. This will later throw an
error.
All Scaler classes also throw warnings when 1D arrays are passed.
All unit tests/doctests are modified to ensure that no 1D arrays are passed,
except in explicit 1D array tests where the warnings have been silenced.
Additional tests are also included which check for different 1D array cases.
2D array tests with one samples and one features are also added and where
they failed, `check_array` call has been modified to give a more useful error
message
2015-09-09 15:49:58 +02:00
434ee958aa
test for accepted sparse matrices
2015-08-26 22:00:55 -04:00
62325cbb58
MAINT merge _check_cv into check_cv as indices argument is removed in 0.17
2015-06-08 16:37:03 +05:30
0650d5502e
DOC adding backlinks to docstrings
2015-06-03 00:24:04 -04:00
f369d3ab0f
Fix RFE / RFECV estimator tags
2015-05-29 11:36:38 -04:00
79ea587e05
FIX make rfe feature importance test deterministic.
2015-04-28 18:26:22 -04:00
c165327940
Add regression test for the number of subsets of features
2015-04-20 12:58:29 -04:00
7bbf10a598
ENH optimize rfecv by eliminating the for loop
2015-04-20 12:27:31 -04:00
0f0e58d35e
Fix RFE - Add the possibility to use feature_importances rather than coef_ when existing, see #2121
2015-04-02 14:56:48 +02:00
17ee7dd79b
DOC & COSMIT deprecate estimator_params in RFE and RFE_CV in docstring
2015-03-29 12:47:53 -04:00
8702801c13
used special.fdtrc instead of fprob
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added integer division
2015-03-23 21:46:59 +05:30
cd2ee7e454
MAINT docstring --> comments to prevent nose from using doc in verbose mode
2015-03-21 11:16:49 +05:30
c6f6cf365c
Merge pull request #4368 from xuewei4d/deprecate_estimator_params
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[MRG + 1] Deprecate estimator_params in RFE and RFECV #4292
2015-03-20 13:15:57 +01:00
b741aa3e5c
FIX coding style #4292
2015-03-10 14:46:10 -04:00
9f312a72b3
Correct warning messages and move warnings to fit method #4292
2015-03-10 10:47:15 -04:00
2bc7ffef1c
Add "See also" for selectors and scoring funs
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Details:
- Reference uni variate selectors and scoring funcs
- Indicate chi2 is only for non-negative features
- Add "See also" formatting rules to contributing
- Add example of good "References" in docstrings
- Misc small doc updates for uni feature selection
- Add missing periods (for consistency)
- Anova -> ANOVA (for consistency)
- Make a numbered list render per item per line (for readability)
- Capitalize the first letter of a numbered list (for readability)
2015-03-10 21:40:25 +08:00
08b97b32c2
Deprecate estimator_params in RFE and RFECV #4292
2015-03-09 16:45:46 -04:00
9bc4de8dae
some fixes for sphinx and in examples
2015-03-02 12:50:53 -05:00
f12a441655
raise noise in test again, be ascii
2015-02-24 16:26:24 -05:00
95f1d9562b
FIX DOC TST: alpha is an uppper bound on FDR
2015-02-24 16:26:24 -05:00
700babc43f
extensive (excessive?) testing of FDR
2015-02-24 16:26:24 -05:00
1add39ff11
[Feature Selection] Fix SelectFDR thresholding bug ( #2771 )
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From https://github.com/scikit-learn/scikit-learn/issues/2771 , we were
not correctly scaling the alpha
parameter (http://en.wikipedia.org/wiki/False_discovery_rate#Benjamini.E2.80.93Hochberg_procedure )
with the number of features (== hypothesis). Thus, the alpha
parameter was not invariant wrt the number of features.
The correction is as suggested in the original issue, and a test has
been added that verifies that for various numbers of features, an
appropriate false discovery rate is generated when using the selector.
2015-02-24 16:25:58 -05:00
5c0c5c672c
MAINT use absolute imports in tests
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as per the guideline in:
http://scikit-learn.org/stable/developers/#coding-guidelines
2015-02-10 13:40:31 +01:00
95681eecca
Merge pull request #4206 from ogrisel/fix-strict-select-fdr
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[MRG] explicit warning message for strict selectors
Also fixes #4059
2015-02-07 21:54:45 +11:00
2ce9eac717
TST more strict selectors with empty support
2015-02-07 11:37:06 +01:00
bc5b403af3
FIX #4059 : explicit warning for strict selectors
2015-02-06 12:06:34 +01:00
97e3b96801
PEP8 compliance
2015-02-05 15:26:46 -05:00
13b6aec5f3
non-inheriting estimator added for rfe, cross validation, and pipeline tests
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non-inheriting estimator added for cross validation
non-inheriting estimator added for pipeline
reconciled diffs
2015-01-29 22:02:38 -05:00
a413f875f1
DOC minor fixes do docstrings, don't document deprecated parameters.
2015-01-16 11:55:02 -05:00
b3fbccca38
FIX various mismatch between docstring and signature params
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DOC max_iterations -> max_iter. Make it consistent with kmeans
MAINT Replace the deprecated dx parameter with d in the docstrings
MAINT Deprecation warning for max_iterations parameter.
2015-01-16 11:54:57 -05:00
abd31d2cad
MAINT Make uniform the error raised for not fitted condition
2015-01-12 00:33:40 +05:30
88555987cc
PEP8 Fix E101, E111 errors and W191, W293, W293 and W391 warnings.
2015-01-08 04:28:24 +05:30
46c1c42131
remove deprecated ``n_bootstraps`` parameter in Bootstrap cv object, verbose in FactorAnalysis and SelectorMixin. Also adjust some deprecation strings.
2014-12-29 13:53:42 -05:00
41e2c10a9e
rename decorator
2014-12-19 17:27:27 -05:00
86f4ee1fa4
don't give names to decorators
2014-12-18 17:49:46 -05:00
94f37f43fa
FIX ducktyping for meta-estimators
2014-12-18 17:48:56 -05:00
Arnaud Rachez