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138 Commits

Author SHA1 Message Date
Christian Lorentzen 99262c06c0
MNT remove sparse_lsqr from utils.fixes (#22894) 2022-03-18 21:14:07 +01:00
Jérémie du Boisberranger 34f9dbf541
MNT Clean fixes and compat for old versions of our dependencies (#22642) 
Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
 2022-03-02 11:32:06 +01:00
Thomas J. Fan f1d3417b08
MNT Drops Python 3.7 in CI, wheel building, and docs (#22617) 
* MNT Drops Python 3.7

* MNT Bump NumPy and SciPy

* FIX Fix build

* FIX Bump versions improved

* DOC Fixes numpy version [pypy]

* BLD [pypy] [icc-build]

* Update docs

* MAINT use scipy.optimize.LinearConstraint in test

* MAINT scipy 1.1.0 related code clean-up

* scipy>=1.3.2 in pyproject.toml's build deps

* [cd build]

* DOC Adds comment about pypy

* MAINT remove _astype_copy_false

* FIX Update check for python version in setup.py

Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
 2022-02-28 18:23:02 +01:00
Thomas J. Fan 5f75acdd12
MNT Bump joblib version dependency to 1.0.0 (#22365) 2022-02-09 13:47:18 +01:00
Thomas J. Fan fb53986483
MNT Fixes deprecation error in [scipy-dev] (#21812) 2021-11-30 11:46:32 +01:00
Eric Larson d63405f1bb
MNT Use non-deprecated SciPy imports (#21603) 2021-11-09 21:00:27 +01:00
Olivier Grisel 47a49c51d1
FIX set docstrings on sklearn.utils.fixes.threadpool_limits/info (#21338) 
* FIX set docstrings on sklearn.utils.fixes.threadpool_limits/info

* Skip threadpool_info/threadpool_limits docstring checks for now
 2021-10-15 12:51:12 +02:00
Jérémie du Boisberranger 1cab25c40d
MNT use new threadpoolctl API (global threadpool controller) (#21206) 2021-10-08 15:14:00 +02:00
Dimitri Papadopoulos Orfanos f71c031314
DOC Typos found by codespell (#21069) 2021-09-17 19:04:54 +02:00
Thomas J. Fan 3ae7c76153
STY Enables black with experimental_string_processing=true (#20412) 2021-06-29 09:47:04 +02:00
Thomas J. Fan 82df48934e
MNT Applies black formatting to most of the code base (#18948) 2021-06-17 14:21:09 -04:00
Jérémie du Boisberranger 6d67937b3c
cln deprecations fixes (#19323) 
Co-authored-by: Olivier Grisel <olivier.grisel@gmail.com>
 2021-05-11 11:08:13 +02:00
Thomas J. Fan 5efcb10c3e
MAINT Vendors packaging/version.py for pep440 versioning (#19826) 
* MAINT Vendors packaging/version for pep440 versioning

* ENH Uses folder structure of packaging

* ENH Uses fixes parse_version

* ENH Uses packaging name

* MAINT Adds packaging

* BLD Use vendored version [cd build]
 2021-04-19 17:06:38 +02:00
Christian Lorentzen 27f1c737f2
FEA Add SplineTransformer (#18368) 2021-01-24 10:53:27 +01:00
Tim Gates a92ec1b758
DOC fix simple typo, variales -> variables (#19054) 2020-12-21 16:58:27 -05:00
Guillaume Lemaitre 2218ec4622
MNT change 0.25 to 1.0 and 0.26 to 1.1 in deprecation messages (#19005) 
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
 2020-12-18 16:09:19 +00:00
Lucy Liu c9543e1651
BUG Fix numpy version for `_take_along_axis` in fixes.py (#18745) 2020-11-03 08:52:11 +01:00
Thomas J. Fan 06d6f8a9f6
FIX Passes global configuration when spawning joblib jobs (#17634) 
* WIP

* BUG Passes context to joblib jobs

* BUG Fix

* BUG Fix

* CLN Moves delayed into fixes

* CLN Adds linter

* REV Revert diff

* DOC Adds comment for removal

* Use a simple implementation
 2020-09-21 16:59:42 +02:00
Hirofumi Suzuki c29092d699
MNT define a parse_version function in sklearn.utils.fixes (#17670) 
Co-authored-by: Loïc Estève <loic.esteve@ymail.com>
Co-authored-by: Roman Yurchak <rth.yurchak@gmail.com>
 2020-06-24 13:35:49 +02:00
Lucy Liu f93f560bb9
ENH add support for sample weights in MAE (#17225) 2020-05-27 15:03:43 +02:00
Nicolas Hug cbe9f08e35
MNT Put back and properly deprecate MaskedArray (#17199) 2020-05-13 08:52:25 +02:00
Nicolas Hug 946fddec7b
BUG Fix instability issue of ARDRegression (with speedup) (#16849) 2020-04-23 10:19:45 -04:00
Roman Yurchak 5a4340834d
Fix mypy errors (#16726) 2020-03-30 15:41:05 +02:00
Roman Yurchak 75d3f29e72
MAINT Remove outdated numpy and scipy backports (#16725) 
* Remove unecessary numpy & scipy backports

* More fixes

* Remove unused imports
 2020-03-20 13:57:18 +01:00
Adrin Jalali 42706ebf2d
MNT CI dropping python-3.5 (#15106) 
* dropping python-3.5

* fix install guide

* fix setup.py

* fix circleci

* advanced_installation

* index.html

* readme

* pyparsing.py

* remove clean_warning_registry

* 1.13.1 and 1.19.1

* don't use 16.04

* 18.04 libatlas-dev -> libatlas-base-dev

* min pillow version for 3.6 is 4.2.1

* echo commands

* fix conflict, and 32 bit

* fix conflict for circle

* fix scikit-image version dep

* mark tests as xfail on 32bit py3.6

* move to 1.13.3 min numpy version, and simplify old code

* remove the rest of _object_dtype_isnan usages

* Revert "remove the rest of _object_dtype_isnan usages"

This reverts commit c6e867ea1f.

* fix issues raised by jeremy

* minor fix

* minor fixes mentioned by Olivier
 2020-02-10 12:28:42 +01:00
mschaffenroth 847b3468c7 MNT Remove utils.fixes.parallel_helper (#15232) 2019-10-14 07:45:10 -04:00
Scott Sievert 7cb5dafebb FEA Implements log-uniform random variable (#11232) 2019-10-02 13:56:24 +02:00
Guillaume Lemaitre 2e8ce318c6 EHN update lobpcg from scipy master (#14971) 2019-09-16 13:39:53 +02:00
Tim Staley 42659232bd Fix ARDRegression accuracy issue with scipy 1.3.0 (#14067) 2019-07-27 13:23:40 -04:00
Guillaume Lemaitre b8ab214967 FIX vendor lobpcg for scipy < 1.3 which incorporates bug fixes (#14195) 2019-06-26 17:23:17 +02:00
Roman Yurchak 1015caf54d MAINT Remove imports from sklearn.utils._joblib (#13676) 
* Remove sklearn.utils._joblib imports

* Lint

* More fixes
 2019-06-18 18:37:14 +04:00
Roman Yurchak cf9a740598 [MRG+1] Use astype(.., copy=False) when possible (#11973) 
* Use astype(.., copy=False) when possible

* Use Use astype(.., copy=False) also in tests

* Fix CI

* Guillaume's comments

* Address review comments

* Add what's new

* Fix CI

* Lint

* Fix merge issues

* More merge conflict fixes

* Fix failing test

* Lint

* Use copy=True in cluster/hierarchical

* More fixes
 2019-03-01 11:07:10 +01:00
Hanmin Qin 16100944b9 MNT Remove utils.fixes.euler_gamma (#13082) 2019-02-04 21:32:23 +11:00
Roman Yurchak 701144559f MAINT Remove unused utils.fixes (#12928) 
This continues the work done in https://github.com/scikit-learn/scikit-learn/pull/12639 on dropping the python 2 support by,
 - ~~removing unnecessary `from __future__` imports~~
 - removing unused `sklearn.utils.fixes` assuming we can agree in https://github.com/scikit-learn/scikit-learn/issues/12927 that `sklearn.utils.fixes` are private as was stated e.g. in https://github.com/scikit-learn/scikit-learn/issues/6616#issuecomment-245109979
 2019-01-08 12:43:49 +11:00
Adrin Jalali 2bd87f6ed8 Remove python < 3.5 from CI (#12746) 2018-12-14 10:53:12 +01:00
jeremiedbb 4e8194909c FIX remove FutureWarning in _object_dtype_isnan and add test (#12567) 2018-11-12 21:28:05 +08:00
Joel Nothman 1128094271 BLD we should ensure continued support for joblib 0.11 (#12350) 2018-11-06 22:10:23 +01:00
Nicolas Hug 6d15840432 DOC Fixed doc issues for utils module (#11445) 2018-07-22 15:23:11 +10:00
Roman Yurchak c09352c241 [MRG] Fix DeprecationWarning due to collections.abc in Python 3.7 (#11431) 
Closes https://github.com/scikit-learn/scikit-learn/issues/11121

This PR removes the deprecation warning about ABC being moved from `collections` to `collections.abc` when importing scikit-learn in Python 3.7.

In the end, I put `collections.abc.{Sequence, Iterable, Mapping, Sized}` in the namespace of `sklearn.utils.fixes`. This was the simplest way I could find, and while it has the drawback of obfuscating the real module name, other approached appeared more problematic and a similar approach is currently used e.g. for `utils.fixes.signature` which is an alias for `inspect.signature`.

We can't just patch six with https://github.com/benjaminp/six/pull/241, because sklearn uses six from 5 years ago, which would  need updating and I'm not sure if it could have side effects (e.g. for pickling backward compatibility etc).

**Edit**: This adds a test checking that generally no warnings are raised when importing scikit-learn top-level modules.
 2018-07-14 15:14:02 -05:00
Guillaume Lemaitre f8adfa27ae [MRG] Ignore and pass-through NaNs in RobustScaler and robust_scale (#11308) 2018-07-05 16:34:31 +02:00
Gael Varoquaux 106bb9e7f5 MAINT: option to unvendor joblib (#11166) 2018-06-29 16:35:45 +02:00
Guillaume Lemaitre c1bc665958 ENH ignore NaNs in PowerTransformer (#11306) 2018-06-22 08:22:24 +10:00
jeremiedbb 0d8a04bd17 [MRG+1] SimpleImputer(strategy="constant") (#11211) 2018-06-20 17:20:33 +02:00
Guillaume Lemaitre b9f3758dfd MAINT add function to ignore nan in min/max sparse functions (#11196) 2018-06-07 06:57:30 +10:00
Guillaume Lemaitre c3548a8e29 [MRG] EHN handle NaN value in QuantileTransformer (#10437) 2018-04-21 19:06:10 +02:00
Joel Nothman df3f7b3b50 PEP8 2018-02-28 15:24:05 +11:00
Loïc Estève e9e623156a MAINT: fix typo in scipy version comment 2018-02-27 14:58:59 +01:00
Joris Van den Bossche a2ebb8cfd2 ENH: new CategoricalEncoder class (#9151) 2017-11-21 20:03:41 +11:00
Naoya Kanai 95aa2952e1 Add logsumexp and comb to utils.fixes (#9046) 2017-06-10 15:01:02 +02:00
Naoya Kanai 6579220588 [MRG+1] Drop NumPy < 1.8 (#8874) 2017-06-07 17:06:06 +02:00