Commit Graph

313 Commits

Author SHA1 Message Date
Minghui Liu 398ffed8d1 Removed DataConversionWarning in Normalize (#8712) 2017-04-25 15:11:03 -04:00
David Robles f49f8905db Incorrect number of samples in One Hot Encoder example (#8255) 2017-02-01 11:33:06 +11:00
Andreas Mueller 5c4b1bb231 [MRG+1] Housekeeping Deprecations for v0.19 (#7927)
* remove stuff to be removed 0.19

* more changes

* remove classes from 0.19 whatsnew

* remove _LearntSelectorMixin

* remove ProjectedGradientNMF, load_lwf_*

* minor fixes

* remove more copy from logistic regression path

* remove lda, qda from __init__.__all__

* remove pg solver in nmf from tests etc

* remove class_weight="auto" from tests

* doctest change for decision_function_shape="ovr"

* remove transfrom from tree test, minor fixes to tree tests

* some fixes in the tests

* undo changes in functions which still allow 1d input...

* also allow 1d in scale

* more test fixes...

* last test fixes in forest and tree

* svm default value change doctest failures

* pep8

* remove more class_weight="auto" stuff

* minor cosmetics in docstrings deprecated / removed behavior.

* say that store_covariance has been moved to __init__ in discriminant_analysis
2016-12-09 12:43:38 -05:00
Kyle Gilliam d39c273022 [MRG+1] Added override of fit_transform to LabelBinarizer (#7670)
* Added override of fit_transform to LabelBinarizer

* Updated fit_transform to call base class method

* Changed fit_transform for code consistency

* Removed whitespace on blank lines

* Fixed line wrap issues for doc gen.

* Used line cont. for term defs

* Standardized bracket usage, fixed line cont. indent level
2016-12-06 16:03:33 -05:00
Joel Nothman 8570622a44 [MRG+1] DOC insert spaces before colons in parameter lists (#7920)
* DOC insert spaces before colons in parameter lists

Complies with numpydoc to improve rendering and automatic quality
assurance such as #7793. Affects listings of Parameters Attributes,
Returns.

Performed with the help of:

    grep -nE '^(    )+[a-zA-Z][a-zA-Z0-9_]*: ' sklearn -R | grep -v -e
    externals -e tests | grep -v -e default: -e else: -e Warning: -e Note:
    -e TRAIN: -e Default: -e True: -e False: -e DOI: -e In: | gsed
    's|\([^:]*\):\([0-9]*\):\([^:]*\):\(.*\)|--- a/\1\n+++ b/\1\n@@ -\2,1
    +\2,1 @@\n-\3:\4\n+\3 :\4|' | git apply --unidiff-zero -

* DOC fix numpydoc format for param
2016-11-25 10:59:22 +01:00
Loïc Estève e5bf61eee1 [MRG+1] Dropping python 2.6 support (#7890)
* Remove Python 2.6 support

Some details about some slightly orthogonal changes:
* Note about cheking safely for nan is likely not valid any more (commit
  introducing it is c80ca91b)
* scipy.linalg.qr econ parameter removed since scipy 0.9 in favour of
  mode='economic'
* Remove unnecessary libgfortran in conda create command

* Putative fix by setting the random seed

* Revert unintended change

* Reinstate previous logic for checking for NaNs

* Reinstate change in error message

Error messages from Python 2.7 assertRegexp does not contain the
function name, in contrast with Python 3 assertRegex
2016-11-23 17:11:04 -05:00
Ang Lu c17156106c [MRG+1] Fix return_norm bug in preprocessing.normalize (#7789)
Fixes #7771
2016-11-23 09:45:32 +11:00
CJ Carey 94c2094f3e [MRG+1] BUG: MultiLabelBinarizer.fit_transform sometimes returns an invalid CSR matrix (#7750)
* BUG: MultiLabelBinarizer makes invalid CSR matrix

See https://github.com/scipy/scipy/issues/6719 for context.

The gist is that the `inverse` array may have a different dtype than `yt.indices`, which causes trouble down the line because, in those cases, `yt.indices` and `yt.indptr` have different dtypes.

Alternately, we could insert `yt.check_format(full_check=False)` after modifying the sparse matrix members.

* Fixing for old numpy

Older versions don't support kwargs for `astype`

* Adding tests

* line-wrapping

* adding comment to tests

[ci skip]

* added rationale comment

[ci skip]
2016-10-26 17:43:35 -04:00
Andreas Mueller 4da44c8541 [MRG+1] replaced some assert_true(np.allclose(x, y)) with assert_almost_equal (#7742)
* replaced some assert_true(np.allclose(x, y)) with assert_almost_equal for better error messages.

also some pep8.

* typo fixes
2016-10-25 09:15:58 -04:00
Konstantin Podshumok 9b2aac9e5c [MRG + 1] [TST] (half-cosmetic) use less nose.tools import to simplify future transition to py.test (#7384)
* use less nose.tools import to simplify future transition to activly developing test suites/runners

* assert_equal -> assert_array_equal in test_feature_hasher_pairs_with_string_values

and one missed ImportError that should be replaced with AttributeError

* test for py2.6 compat with except AttributeError

* fix importing of SkipTest

* force using nose in python2.6 for now

* there was no assert_dict_equal in py2.6. but we can use assert_equal

although failed test will look a little bit ugly

* remove nose imports from doc/datasets
2016-10-07 12:46:52 -04:00
Josh Karnofsky 9551ec85ea DOC add spaces before colons in docstrings (#7589) 2016-10-06 14:01:12 +11:00
Kathy Chen d5b66f9da9 [MRG+1] Docs: refer users to the other encoders to do one hot encoding for labels. (#7315)
* refer users to the other encoders to do one hot encoding for labels.

* added to the 'see more' for labelbinarizer, multilabelbinarizer, and labelencoder' as well as an example to multilabel binarizer

* added note about y labels to the OneHotEncoder docstring

* removed example from MultiLabelBinarizer

* documentation should specify LabelBinarizer, not MultiLabelBinarizer in OHE
2016-10-05 11:28:37 -04:00
Andreas Mueller 1dff0aec21 clean up deprecation warning stuff in common tests
minor fixes in preprocessing tests
2016-09-22 19:35:31 +05:30
Shashank Shekhar 474483efa4 Added user guide link in function_tranformer docstring (#5785)
* Added user guide link in function_tranformer docstring

* Added function_transformer tag to preprocessing user guide
2016-09-12 18:33:22 -04:00
Manoj Kumar 8da5092e83 [MRG] Fail imputer early when number of features are not the same in fit and transform (#7374) 2016-09-11 23:22:13 +10:00
Andreas Mueller 6972d6c15c DOC minor doc fixes for sphinx. (#7357) 2016-09-08 10:07:40 +10:00
Joel Nothman 0a0bf2478e Revert "ENH: Add indicator features to imputer output (#6607)" (#7292)
This reverts commit 18396be8cb as it was
merged when incomplete.
2016-08-30 21:28:01 +10:00
Andreas Mueller 002ff1237a fix some warnings in test outputs. 2016-08-27 17:02:22 +02:00
Caio Oliveira 19d6d925ed [MRG+1] Fix for "_transform_selected" not copying when "selected='all'" (#7201)
* fixes issue scikit-learn/scikit-learn#7194

* Added test

* Making `selected='all'` explicit on test

* Updated whats_new.rst

* Fixed typo on `whats_new.rst`
2016-08-18 11:47:00 +02:00
Alexandre Gramfort 02806e9782 cosmit 2016-08-13 11:03:59 +02:00
Konstantin Podshumok f893565773 [MRG+2] ENH: (minor) add quantile_low/high parameters to robust scaler (#5929)
* add quantile_low/high parameters to robust scaler

add versionadded tags

* robust scaler: add parameter for quantile_range, check its validity

* robust scaler: simplify params validations

fix typo in docstrings of RobustScaler

* preprocessing.data fix some lines > 80 columns

* add whatsnew for robust scaler quantile_range param

add missing url link in whatsnew
2016-08-13 10:32:16 +02:00
Óscar Nájera 8034b2926e more examples references 2016-08-03 20:23:50 +02:00
Gael Varoquaux 1dbc069cab TST: Speed up: cv=2
This is a smoke test. Hence there is no point having cv=4
2016-06-22 15:39:53 +02:00
John Moeller 055bc4c004 pep8 2016-06-22 02:10:41 -06:00
John Moeller 13f68c93b8 Simplifying imports and test 2016-06-17 17:44:51 -06:00
John Moeller cc9dbac37f Adding test for PR #6900 2016-06-17 17:28:36 -06:00
John Moeller 2242b1b2ea Make KernelCenterer a _pairwise operation
Replicate solution to 9a520779c2 except that `_pairwise` should always be `True` for `KernelCenterer` because it's supposed to receive a Gram matrix. This should make `KernelCenterer` usable in `Pipeline`s.

Happy to add tests, just tell me what should be covered.
2016-06-16 22:49:36 -06:00
Kevin Wang a2498218ac DOC cross-reference preprocessing estimators and functions in their docstrings 2016-05-10 11:00:41 +02:00
Thierry Guillemot 78a674875e Correct the deprecation of the random_integers numpy function. (#6712) 2016-04-26 16:08:48 +02:00
Maniteja Nandana 18396be8cb ENH: Add indicator features to imputer output 2016-04-14 12:21:16 +05:30
ningchi 1d487fb550 [MRG+1] issue #6532 Add `inverse_transform` function (#6570)
* [MRG+1] #6532 Add inverse_func argument to FunctionTransformer


* modify test:inverse_func is not true inverse
2016-04-12 01:26:30 -04:00
Toshihiro Kamishima 45ff64bdec type echecking before comparison, to avoid warning of multiple comparison (#6615) 2016-04-11 17:52:42 +02:00
Alexandre Gramfort acdaeaf5dd Merge pull request #6606 from tkamishima/tkamishima_one_hot_encoder_parameter_checking
[MRG] type checking before comparison, to avoid warning messages, in preprocessing.OneHotEncoder
2016-03-31 22:33:55 +02:00
Manoj Kumar 24198ffbb8 Merge pull request #6419 from nelson-liu/fix_linkcheck
[MRG+1] DOC: Fix broken links
2016-03-30 18:17:48 -04:00
Toshihiro Kamishima d574a03497 type checking before comparison, to avoid warning messages
If np.array is pssed  as a parameter 'n_values', warning of multiple comparison is printed. This patch avoid this problem.
2016-03-31 01:09:15 +09:00
YenChenLin 08e1db4cd3 Test normalize function in data.py 2016-03-26 10:38:29 +08:00
Rémy Léone 9b7176dd9d [DOC] Fix broken links 2016-03-23 12:45:34 -07:00
dsquareindia e9492b7ec2 LabelBinarizer single label case now works for sparse and dense case 2016-03-21 10:43:56 +05:30
Jake Vanderplas 90f2c184c6 Merge pull request #6453 from yenchenlin1994/fix-its-typo
[MRG] DOC Fix misuse of "it's"
2016-02-25 21:04:56 -08:00
YenChenLin ca4c727e22 Fix misuse of it's 2016-02-26 10:16:28 +08:00
Jake Vanderplas 7895d38ca6 Merge pull request #6372 from amueller/poly_feature_names
[MRG+2] add get_feature_names to PolynomialFeatures
2016-02-25 11:55:03 -08:00
Andreas Mueller 8fb928d644 fixed doc for powers, added test 2016-02-24 17:08:15 -05:00
Andreas Mueller 897f8b6cc6 don't do ^1 2016-02-22 15:09:47 -05:00
Andreas Mueller ddc1740207 fix PolynomialFeatures.powers_ in python 0.16.1 2016-02-19 15:53:37 -05:00
Andreas Mueller 3fa684db0e add get_feature_names to PolynomialFeatures 2016-02-19 15:52:55 -05:00
giorgiop 140a5acda8 MAINT depr of center_data, normalize in linear_model 2016-02-17 14:26:50 -05:00
Loïc Estève 6c627633bc Fix test_label_binarizer on Windows
Looks like .fill is not very friendly with unicode numpy scalar
2016-02-11 13:24:16 +01:00
dsquareindia 74475bc929 LabelEncoder now raises error for 0-D arrays 2016-01-26 01:34:26 +05:30
Gael Varoquaux 317dea8a05 Merge pull request #6005 from seales/SpellingFix
[MRG+1] General spelling fixes
2016-01-04 13:42:20 +01:00
Brian McFee 318b93d2ae Implemented keyword arguments in FunctionTransformer 2015-12-19 23:00:35 -05:00