DOC rename Birch to BIRCH in docs (#19368)
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@ -103,7 +103,7 @@ Overview of clustering methods
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- Flat geometry, good for density estimation
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- Mahalanobis distances to centers
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* - :ref:`Birch`
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* - :ref:`BIRCH <birch>`
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- branching factor, threshold, optional global clusterer.
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- Large ``n_clusters`` and ``n_samples``
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- Large dataset, outlier removal, data reduction.
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@ -943,7 +943,7 @@ represented as children of a larger parent cluster.
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.. _birch:
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Birch
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BIRCH
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=====
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The :class:`Birch` builds a tree called the Clustering Feature Tree (CFT)
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@ -962,7 +962,7 @@ the need to hold the entire input data in memory. This information includes:
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- Centroids - To avoid recalculation linear sum / n_samples.
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- Squared norm of the centroids.
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The Birch algorithm has two parameters, the threshold and the branching factor.
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The BIRCH algorithm has two parameters, the threshold and the branching factor.
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The branching factor limits the number of subclusters in a node and the
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threshold limits the distance between the entering sample and the existing
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subclusters.
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@ -996,13 +996,13 @@ clusters (labels) and the samples are mapped to the global label of the nearest
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then this node is again split into two and the process is continued
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recursively, till it reaches the root.
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**Birch or MiniBatchKMeans?**
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**BIRCH or MiniBatchKMeans?**
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- Birch does not scale very well to high dimensional data. As a rule of thumb if
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- BIRCH does not scale very well to high dimensional data. As a rule of thumb if
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``n_features`` is greater than twenty, it is generally better to use MiniBatchKMeans.
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- If the number of instances of data needs to be reduced, or if one wants a
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large number of subclusters either as a preprocessing step or otherwise,
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Birch is more useful than MiniBatchKMeans.
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BIRCH is more useful than MiniBatchKMeans.
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**How to use partial_fit?**
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@ -3,7 +3,7 @@
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Compare BIRCH and MiniBatchKMeans
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=================================
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This example compares the timing of Birch (with and without the global
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This example compares the timing of BIRCH (with and without the global
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clustering step) and MiniBatchKMeans on a synthetic dataset having
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100,000 samples and 2 features generated using make_blobs.
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@ -36,7 +36,7 @@ xx, yy = np.meshgrid(xx, yy)
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n_centres = np.hstack((np.ravel(xx)[:, np.newaxis],
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np.ravel(yy)[:, np.newaxis]))
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# Generate blobs to do a comparison between MiniBatchKMeans and Birch.
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# Generate blobs to do a comparison between MiniBatchKMeans and BIRCH.
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X, y = make_blobs(n_samples=100000, centers=n_centres, random_state=0)
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# Use all colors that matplotlib provides by default.
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@ -45,7 +45,7 @@ colors_ = cycle(colors.cnames.keys())
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fig = plt.figure(figsize=(12, 4))
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fig.subplots_adjust(left=0.04, right=0.98, bottom=0.1, top=0.9)
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# Compute clustering with Birch with and without the final clustering step
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# Compute clustering with BIRCH with and without the final clustering step
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# and plot.
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birch_models = [Birch(threshold=1.7, n_clusters=None),
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Birch(threshold=1.7, n_clusters=100)]
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@ -55,7 +55,7 @@ for ind, (birch_model, info) in enumerate(zip(birch_models, final_step)):
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t = time()
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birch_model.fit(X)
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time_ = time() - t
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print("Birch %s as the final step took %0.2f seconds" % (
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print("BIRCH %s as the final step took %0.2f seconds" % (
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info, (time() - t)))
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# Plot result
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@ -75,7 +75,7 @@ for ind, (birch_model, info) in enumerate(zip(birch_models, final_step)):
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ax.set_ylim([-25, 25])
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ax.set_xlim([-25, 25])
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ax.set_autoscaley_on(False)
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ax.set_title('Birch %s' % info)
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ax.set_title('BIRCH %s' % info)
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# Compute clustering with MiniBatchKMeans.
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mbk = MiniBatchKMeans(init='k-means++', n_clusters=100, batch_size=100,
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@ -143,7 +143,7 @@ for i_dataset, (dataset, algo_params) in enumerate(datasets):
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('AgglomerativeClustering', average_linkage),
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('DBSCAN', dbscan),
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('OPTICS', optics),
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('Birch', birch),
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('BIRCH', birch),
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('GaussianMixture', gmm)
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)
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@ -333,7 +333,7 @@ class _CFSubcluster:
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class Birch(ClusterMixin, TransformerMixin, BaseEstimator):
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"""Implements the Birch clustering algorithm.
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"""Implements the BIRCH clustering algorithm.
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It is a memory-efficient, online-learning algorithm provided as an
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alternative to :class:`MiniBatchKMeans`. It constructs a tree
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@ -674,7 +674,7 @@ class Birch(ClusterMixin, TransformerMixin, BaseEstimator):
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self.subcluster_labels_ = np.arange(len(centroids))
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if not_enough_centroids:
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warnings.warn(
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"Number of subclusters found (%d) by Birch is less "
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"Number of subclusters found (%d) by BIRCH is less "
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"than (%d). Decrease the threshold."
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% (len(centroids), self.n_clusters), ConvergenceWarning)
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else:
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