scikit-learn/sklearn/tree/_export.py

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"""
This module defines export functions for decision trees.
"""
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# Authors: Gilles Louppe <g.louppe@gmail.com>
# Peter Prettenhofer <peter.prettenhofer@gmail.com>
# Brian Holt <bdholt1@gmail.com>
# Noel Dawe <noel@dawe.me>
# Satrajit Gosh <satrajit.ghosh@gmail.com>
2014-10-04 12:44:44 +08:00
# Trevor Stephens <trev.stephens@gmail.com>
# Li Li <aiki.nogard@gmail.com>
# Giuseppe Vettigli <vettigli@gmail.com>
2016-04-01 08:25:31 +08:00
# License: BSD 3 clause
from io import StringIO
from numbers import Integral
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import numpy as np
from ..utils.validation import check_is_fitted
from ..base import is_classifier
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from . import _criterion
from . import _tree
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
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from ._reingold_tilford import buchheim, Tree
from . import DecisionTreeClassifier
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def _color_brew(n):
"""Generate n colors with equally spaced hues.
Parameters
----------
n : int
The number of colors required.
Returns
-------
color_list : list, length n
List of n tuples of form (R, G, B) being the components of each color.
"""
color_list = []
# Initialize saturation & value; calculate chroma & value shift
s, v = 0.75, 0.9
c = s * v
m = v - c
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for h in np.arange(25, 385, 360.0 / n).astype(int):
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# Calculate some intermediate values
h_bar = h / 60.0
x = c * (1 - abs((h_bar % 2) - 1))
# Initialize RGB with same hue & chroma as our color
rgb = [
(c, x, 0),
(x, c, 0),
(0, c, x),
(0, x, c),
(x, 0, c),
(c, 0, x),
(c, x, 0),
]
r, g, b = rgb[int(h_bar)]
# Shift the initial RGB values to match value and store
rgb = [(int(255 * (r + m))), (int(255 * (g + m))), (int(255 * (b + m)))]
color_list.append(rgb)
return color_list
class Sentinel:
def __repr__(self):
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return '"tree.dot"'
SENTINEL = Sentinel()
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def plot_tree(
decision_tree,
*,
max_depth=None,
feature_names=None,
class_names=None,
label="all",
filled=False,
impurity=True,
node_ids=False,
proportion=False,
rounded=False,
precision=3,
ax=None,
fontsize=None,
):
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
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"""Plot a decision tree.
The sample counts that are shown are weighted with any sample_weights that
might be present.
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
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The visualization is fit automatically to the size of the axis.
Use the ``figsize`` or ``dpi`` arguments of ``plt.figure`` to control
the size of the rendering.
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Read more in the :ref:`User Guide <tree>`.
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
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.. versionadded:: 0.21
Parameters
----------
decision_tree : decision tree regressor or classifier
The decision tree to be plotted.
max_depth : int, default=None
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The maximum depth of the representation. If None, the tree is fully
generated.
feature_names : list of strings, default=None
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Names of each of the features.
If None, generic names will be used ("X[0]", "X[1]", ...).
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class_names : list of str or bool, default=None
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Names of each of the target classes in ascending numerical order.
Only relevant for classification and not supported for multi-output.
If ``True``, shows a symbolic representation of the class name.
label : {'all', 'root', 'none'}, default='all'
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Whether to show informative labels for impurity, etc.
Options include 'all' to show at every node, 'root' to show only at
the top root node, or 'none' to not show at any node.
filled : bool, default=False
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When set to ``True``, paint nodes to indicate majority class for
classification, extremity of values for regression, or purity of node
for multi-output.
impurity : bool, default=True
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When set to ``True``, show the impurity at each node.
node_ids : bool, default=False
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When set to ``True``, show the ID number on each node.
proportion : bool, default=False
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When set to ``True``, change the display of 'values' and/or 'samples'
to be proportions and percentages respectively.
rounded : bool, default=False
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When set to ``True``, draw node boxes with rounded corners and use
Helvetica fonts instead of Times-Roman.
precision : int, default=3
Number of digits of precision for floating point in the values of
impurity, threshold and value attributes of each node.
ax : matplotlib axis, default=None
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
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Axes to plot to. If None, use current axis. Any previous content
is cleared.
fontsize : int, default=None
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
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Size of text font. If None, determined automatically to fit figure.
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Returns
-------
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
annotations : list of artists
List containing the artists for the annotation boxes making up the
tree.
Examples
--------
>>> from sklearn.datasets import load_iris
>>> from sklearn import tree
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
>>> clf = tree.DecisionTreeClassifier(random_state=0)
>>> iris = load_iris()
>>> clf = clf.fit(iris.data, iris.target)
>>> tree.plot_tree(clf)
[...]
"""
check_is_fitted(decision_tree)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
exporter = _MPLTreeExporter(
max_depth=max_depth,
feature_names=feature_names,
class_names=class_names,
label=label,
filled=filled,
impurity=impurity,
node_ids=node_ids,
proportion=proportion,
rounded=rounded,
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
precision=precision,
fontsize=fontsize,
)
return exporter.export(decision_tree, ax=ax)
class _BaseTreeExporter:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
def __init__(
self,
max_depth=None,
feature_names=None,
class_names=None,
label="all",
filled=False,
impurity=True,
node_ids=False,
proportion=False,
rounded=False,
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
precision=3,
fontsize=None,
):
self.max_depth = max_depth
self.feature_names = feature_names
self.class_names = class_names
self.label = label
self.filled = filled
self.impurity = impurity
self.node_ids = node_ids
self.proportion = proportion
self.rounded = rounded
self.precision = precision
self.fontsize = fontsize
def get_color(self, value):
2014-10-04 12:44:44 +08:00
# Find the appropriate color & intensity for a node
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.colors["bounds"] is None:
2014-10-04 12:44:44 +08:00
# Classification tree
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
color = list(self.colors["rgb"][np.argmax(value)])
2014-10-04 12:44:44 +08:00
sorted_values = sorted(value, reverse=True)
2016-02-18 22:02:10 +08:00
if len(sorted_values) == 1:
alpha = 0
else:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
alpha = (sorted_values[0] - sorted_values[1]) / (1 - sorted_values[1])
2014-10-04 12:44:44 +08:00
else:
# Regression tree or multi-output
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
color = list(self.colors["rgb"][0])
alpha = (value - self.colors["bounds"][0]) / (
self.colors["bounds"][1] - self.colors["bounds"][0]
)
# unpack numpy scalars
alpha = float(alpha)
# compute the color as alpha against white
color = [int(round(alpha * c + (1 - alpha) * 255, 0)) for c in color]
# Return html color code in #RRGGBB format
return "#%2x%2x%2x" % tuple(color)
def get_fill_color(self, tree, node_id):
# Fetch appropriate color for node
if "rgb" not in self.colors:
# Initialize colors and bounds if required
self.colors["rgb"] = _color_brew(tree.n_classes[0])
if tree.n_outputs != 1:
# Find max and min impurities for multi-output
self.colors["bounds"] = (np.min(-tree.impurity), np.max(-tree.impurity))
elif tree.n_classes[0] == 1 and len(np.unique(tree.value)) != 1:
# Find max and min values in leaf nodes for regression
self.colors["bounds"] = (np.min(tree.value), np.max(tree.value))
if tree.n_outputs == 1:
node_val = tree.value[node_id][0, :] / tree.weighted_n_node_samples[node_id]
if tree.n_classes[0] == 1:
# Regression
node_val = tree.value[node_id][0, :]
else:
# If multi-output color node by impurity
node_val = -tree.impurity[node_id]
return self.get_color(node_val)
2014-10-04 12:44:44 +08:00
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
def node_to_str(self, tree, node_id, criterion):
2014-10-04 12:44:44 +08:00
# Generate the node content string
if tree.n_outputs == 1:
2014-10-04 12:44:44 +08:00
value = tree.value[node_id][0, :]
else:
value = tree.value[node_id]
# Should labels be shown?
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
labels = (self.label == "root" and node_id == 0) or self.label == "all"
2014-10-04 12:44:44 +08:00
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
characters = self.characters
node_string = characters[-1]
2014-10-04 12:44:44 +08:00
# Write node ID
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.node_ids:
2014-10-04 12:44:44 +08:00
if labels:
node_string += "node "
node_string += characters[0] + str(node_id) + characters[4]
# Write decision criteria
if tree.children_left[node_id] != _tree.TREE_LEAF:
# Always write node decision criteria, except for leaves
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.feature_names is not None:
feature = self.feature_names[tree.feature[node_id]]
else:
2014-10-04 12:44:44 +08:00
feature = "X%s%s%s" % (
characters[1],
tree.feature[node_id],
characters[2],
)
node_string += "%s %s %s%s" % (
feature,
characters[3],
round(tree.threshold[node_id], self.precision),
2014-10-04 12:44:44 +08:00
characters[4],
)
2014-10-04 12:44:44 +08:00
# Write impurity
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.impurity:
2015-09-09 03:07:30 +08:00
if isinstance(criterion, _criterion.FriedmanMSE):
criterion = "friedman_mse"
elif isinstance(criterion, _criterion.MSE) or criterion == "squared_error":
criterion = "squared_error"
elif not isinstance(criterion, str):
2014-10-04 12:44:44 +08:00
criterion = "impurity"
if labels:
node_string += "%s = " % criterion
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
node_string += (
str(round(tree.impurity[node_id], self.precision)) + characters[4]
)
2014-10-04 12:44:44 +08:00
# Write node sample count
if labels:
node_string += "samples = "
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.proportion:
2014-10-04 12:44:44 +08:00
percent = (
100.0 * tree.n_node_samples[node_id] / float(tree.n_node_samples[0])
)
node_string += str(round(percent, 1)) + "%" + characters[4]
else:
node_string += str(tree.n_node_samples[node_id]) + characters[4]
# Write node class distribution / regression value
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.proportion and tree.n_classes[0] != 1:
2014-10-04 12:44:44 +08:00
# For classification this will show the proportion of samples
value = value / tree.weighted_n_node_samples[node_id]
if labels:
node_string += "value = "
if tree.n_classes[0] == 1:
# Regression
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
value_text = np.around(value, self.precision)
elif self.proportion:
2014-10-04 12:44:44 +08:00
# Classification
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
value_text = np.around(value, self.precision)
2014-10-04 12:44:44 +08:00
elif np.all(np.equal(np.mod(value, 1), 0)):
# Classification without floating-point weights
value_text = value.astype(int)
else:
# Classification with floating-point weights
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
value_text = np.around(value, self.precision)
2014-10-04 12:44:44 +08:00
# Strip whitespace
value_text = str(value_text.astype("S32")).replace("b'", "'")
value_text = value_text.replace("' '", ", ").replace("'", "")
if tree.n_classes[0] == 1 and tree.n_outputs == 1:
value_text = value_text.replace("[", "").replace("]", "")
value_text = value_text.replace("\n ", characters[4])
node_string += value_text + characters[4]
# Write node majority class
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if (
self.class_names is not None
2014-10-04 12:44:44 +08:00
and tree.n_classes[0] != 1
and tree.n_outputs == 1
):
# Only done for single-output classification trees
if labels:
node_string += "class = "
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.class_names is not True:
class_name = self.class_names[np.argmax(value)]
2014-10-04 12:44:44 +08:00
else:
class_name = "y%s%s%s" % (
characters[1],
np.argmax(value),
characters[2],
)
node_string += class_name
2014-10-04 12:44:44 +08:00
# Clean up any trailing newlines
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if node_string.endswith(characters[4]):
node_string = node_string[: -len(characters[4])]
2014-10-04 12:44:44 +08:00
return node_string + characters[5]
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
class _DOTTreeExporter(_BaseTreeExporter):
def __init__(
self,
out_file=SENTINEL,
max_depth=None,
feature_names=None,
class_names=None,
label="all",
filled=False,
leaves_parallel=False,
impurity=True,
node_ids=False,
proportion=False,
rotate=False,
rounded=False,
special_characters=False,
precision=3,
fontname="helvetica",
):
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
2019-01-11 05:27:06 +08:00
super().__init__(
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
max_depth=max_depth,
feature_names=feature_names,
class_names=class_names,
label=label,
filled=filled,
impurity=impurity,
node_ids=node_ids,
proportion=proportion,
rounded=rounded,
precision=precision,
)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.leaves_parallel = leaves_parallel
self.out_file = out_file
self.special_characters = special_characters
self.fontname = fontname
self.rotate = rotate
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
# PostScript compatibility for special characters
if special_characters:
self.characters = ["&#35;", "<SUB>", "</SUB>", "&le;", "<br/>", ">", "<"]
else:
self.characters = ["#", "[", "]", "<=", "\\n", '"', '"']
# validate
if isinstance(precision, Integral):
if precision < 0:
raise ValueError(
"'precision' should be greater or equal to 0."
" Got {} instead.".format(precision)
)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
else:
raise ValueError(
"'precision' should be an integer. Got {} instead.".format(
type(precision)
)
)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
# The depth of each node for plotting with 'leaf' option
self.ranks = {"leaves": []}
# The colors to render each node with
self.colors = {"bounds": None}
def export(self, decision_tree):
# Check length of feature_names before getting into the tree node
# Raise error if length of feature_names does not match
# n_features_in_ in the decision_tree
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.feature_names is not None:
if len(self.feature_names) != decision_tree.n_features_in_:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
raise ValueError(
"Length of feature_names, %d does not match number of features, %d"
% (len(self.feature_names), decision_tree.n_features_in_)
)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
# each part writes to out_file
self.head()
# Now recurse the tree and add node & edge attributes
if isinstance(decision_tree, _tree.Tree):
self.recurse(decision_tree, 0, criterion="impurity")
else:
self.recurse(decision_tree.tree_, 0, criterion=decision_tree.criterion)
self.tail()
def tail(self):
# If required, draw leaf nodes at same depth as each other
if self.leaves_parallel:
for rank in sorted(self.ranks):
self.out_file.write(
"{rank=same ; " + "; ".join(r for r in self.ranks[rank]) + "} ;\n"
)
self.out_file.write("}")
def head(self):
self.out_file.write("digraph Tree {\n")
# Specify node aesthetics
self.out_file.write("node [shape=box")
rounded_filled = []
if self.filled:
rounded_filled.append("filled")
if self.rounded:
rounded_filled.append("rounded")
if len(rounded_filled) > 0:
self.out_file.write(
', style="%s", color="black"' % ", ".join(rounded_filled)
)
self.out_file.write(', fontname="%s"' % self.fontname)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.out_file.write("] ;\n")
# Specify graph & edge aesthetics
if self.leaves_parallel:
self.out_file.write("graph [ranksep=equally, splines=polyline] ;\n")
self.out_file.write('edge [fontname="%s"] ;\n' % self.fontname)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.rotate:
self.out_file.write("rankdir=LR ;\n")
def recurse(self, tree, node_id, criterion, parent=None, depth=0):
if node_id == _tree.TREE_LEAF:
raise ValueError("Invalid node_id %s" % _tree.TREE_LEAF)
left_child = tree.children_left[node_id]
right_child = tree.children_right[node_id]
# Add node with description
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.max_depth is None or depth <= self.max_depth:
2014-10-04 12:44:44 +08:00
# Collect ranks for 'leaf' option in plot_options
if left_child == _tree.TREE_LEAF:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.ranks["leaves"].append(str(node_id))
elif str(depth) not in self.ranks:
self.ranks[str(depth)] = [str(node_id)]
2014-10-04 12:44:44 +08:00
else:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.ranks[str(depth)].append(str(node_id))
self.out_file.write(
"%d [label=%s" % (node_id, self.node_to_str(tree, node_id, criterion))
)
if self.filled:
self.out_file.write(
', fillcolor="%s"' % self.get_fill_color(tree, node_id)
)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.out_file.write("] ;\n")
2013-04-14 21:49:20 +08:00
if parent is not None:
# Add edge to parent
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.out_file.write("%d -> %d" % (parent, node_id))
2014-10-04 12:44:44 +08:00
if parent == 0:
# Draw True/False labels if parent is root node
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
angles = np.array([45, -45]) * ((self.rotate - 0.5) * -2)
self.out_file.write(" [labeldistance=2.5, labelangle=")
2014-10-04 12:44:44 +08:00
if node_id == 1:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.out_file.write('%d, headlabel="True"]' % angles[0])
2014-10-04 12:44:44 +08:00
else:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.out_file.write('%d, headlabel="False"]' % angles[1])
self.out_file.write(" ;\n")
2013-04-14 21:49:20 +08:00
if left_child != _tree.TREE_LEAF:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.recurse(
tree,
left_child,
criterion=criterion,
parent=node_id,
depth=depth + 1,
)
self.recurse(
tree,
right_child,
criterion=criterion,
parent=node_id,
depth=depth + 1,
)
2013-04-14 21:49:20 +08:00
else:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.ranks["leaves"].append(str(node_id))
2014-10-04 12:44:44 +08:00
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.out_file.write('%d [label="(...)"' % node_id)
if self.filled:
2014-10-04 12:44:44 +08:00
# color cropped nodes grey
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.out_file.write(', fillcolor="#C0C0C0"')
self.out_file.write("] ;\n" % node_id)
2013-04-14 21:49:20 +08:00
if parent is not None:
# Add edge to parent
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.out_file.write("%d -> %d ;\n" % (parent, node_id))
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
class _MPLTreeExporter(_BaseTreeExporter):
def __init__(
self,
max_depth=None,
feature_names=None,
class_names=None,
label="all",
filled=False,
impurity=True,
node_ids=False,
proportion=False,
rounded=False,
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
precision=3,
fontsize=None,
):
2019-01-11 05:27:06 +08:00
super().__init__(
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
max_depth=max_depth,
feature_names=feature_names,
class_names=class_names,
label=label,
filled=filled,
impurity=impurity,
node_ids=node_ids,
proportion=proportion,
rounded=rounded,
precision=precision,
)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.fontsize = fontsize
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
# validate
if isinstance(precision, Integral):
if precision < 0:
raise ValueError(
"'precision' should be greater or equal to 0."
" Got {} instead.".format(precision)
)
else:
raise ValueError(
"'precision' should be an integer. Got {} instead.".format(
type(precision)
)
)
2014-10-04 12:44:44 +08:00
# The depth of each node for plotting with 'leaf' option
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.ranks = {"leaves": []}
2014-10-04 12:44:44 +08:00
# The colors to render each node with
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.colors = {"bounds": None}
2014-10-04 12:44:44 +08:00
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self.characters = ["#", "[", "]", "<=", "\n", "", ""]
self.bbox_args = dict()
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.rounded:
self.bbox_args["boxstyle"] = "round"
self.arrow_args = dict(arrowstyle="<-")
def _make_tree(self, node_id, et, criterion, depth=0):
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
# traverses _tree.Tree recursively, builds intermediate
# "_reingold_tilford.Tree" object
name = self.node_to_str(et, node_id, criterion=criterion)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if et.children_left[node_id] != _tree.TREE_LEAF and (
self.max_depth is None or depth <= self.max_depth
):
children = [
self._make_tree(
et.children_left[node_id], et, criterion, depth=depth + 1
),
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
self._make_tree(
et.children_right[node_id], et, criterion, depth=depth + 1
),
]
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
else:
return Tree(name, node_id)
return Tree(name, node_id, *children)
def export(self, decision_tree, ax=None):
import matplotlib.pyplot as plt
from matplotlib.text import Annotation
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if ax is None:
ax = plt.gca()
ax.clear()
ax.set_axis_off()
my_tree = self._make_tree(0, decision_tree.tree_, decision_tree.criterion)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
draw_tree = buchheim(my_tree)
# important to make sure we're still
# inside the axis after drawing the box
# this makes sense because the width of a box
# is about the same as the distance between boxes
max_x, max_y = draw_tree.max_extents() + 1
ax_width = ax.get_window_extent().width
ax_height = ax.get_window_extent().height
scale_x = ax_width / max_x
scale_y = ax_height / max_y
self.recurse(draw_tree, decision_tree.tree_, ax, max_x, max_y)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
anns = [ann for ann in ax.get_children() if isinstance(ann, Annotation)]
# update sizes of all bboxes
renderer = ax.figure.canvas.get_renderer()
for ann in anns:
ann.update_bbox_position_size(renderer)
if self.fontsize is None:
# get figure to data transform
# adjust fontsize to avoid overlap
# get max box width and height
extents = [ann.get_bbox_patch().get_window_extent() for ann in anns]
max_width = max([extent.width for extent in extents])
max_height = max([extent.height for extent in extents])
# width should be around scale_x in axis coordinates
size = anns[0].get_fontsize() * min(
scale_x / max_width, scale_y / max_height
)
for ann in anns:
ann.set_fontsize(size)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
return anns
def recurse(self, node, tree, ax, max_x, max_y, depth=0):
import matplotlib.pyplot as plt
kwargs = dict(
bbox=self.bbox_args.copy(),
ha="center",
va="center",
zorder=100 - 10 * depth,
xycoords="axes fraction",
arrowprops=self.arrow_args.copy(),
)
kwargs["arrowprops"]["edgecolor"] = plt.rcParams["text.color"]
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.fontsize is not None:
kwargs["fontsize"] = self.fontsize
# offset things by .5 to center them in plot
xy = ((node.x + 0.5) / max_x, (max_y - node.y - 0.5) / max_y)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if self.max_depth is None or depth <= self.max_depth:
if self.filled:
kwargs["bbox"]["fc"] = self.get_fill_color(tree, node.tree.node_id)
else:
kwargs["bbox"]["fc"] = ax.get_facecolor()
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
if node.parent is None:
# root
ax.annotate(node.tree.label, xy, **kwargs)
else:
xy_parent = (
(node.parent.x + 0.5) / max_x,
(max_y - node.parent.y - 0.5) / max_y,
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
)
ax.annotate(node.tree.label, xy_parent, xy, **kwargs)
for child in node.children:
self.recurse(child, tree, ax, max_x, max_y, depth=depth + 1)
2014-10-04 12:44:44 +08:00
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
else:
xy_parent = (
(node.parent.x + 0.5) / max_x,
(max_y - node.parent.y - 0.5) / max_y,
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
)
kwargs["bbox"]["fc"] = "grey"
ax.annotate("\n (...) \n", xy_parent, xy, **kwargs)
2014-10-04 12:44:44 +08:00
def export_graphviz(
decision_tree,
out_file=None,
*,
max_depth=None,
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
feature_names=None,
class_names=None,
label="all",
filled=False,
leaves_parallel=False,
impurity=True,
node_ids=False,
proportion=False,
rotate=False,
rounded=False,
special_characters=False,
precision=3,
fontname="helvetica",
):
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
"""Export a decision tree in DOT format.
This function generates a GraphViz representation of the decision tree,
which is then written into `out_file`. Once exported, graphical renderings
can be generated using, for example::
$ dot -Tps tree.dot -o tree.ps (PostScript format)
$ dot -Tpng tree.dot -o tree.png (PNG format)
The sample counts that are shown are weighted with any sample_weights that
might be present.
Read more in the :ref:`User Guide <tree>`.
Parameters
----------
decision_tree : decision tree classifier
The decision tree to be exported to GraphViz.
out_file : object or str, default=None
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
Handle or name of the output file. If ``None``, the result is
returned as a string.
.. versionchanged:: 0.20
Default of out_file changed from "tree.dot" to None.
max_depth : int, default=None
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
The maximum depth of the representation. If None, the tree is fully
generated.
feature_names : list of str, default=None
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
Names of each of the features.
If None generic names will be used ("feature_0", "feature_1", ...).
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
class_names : list of str or bool, default=None
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
Names of each of the target classes in ascending numerical order.
Only relevant for classification and not supported for multi-output.
If ``True``, shows a symbolic representation of the class name.
label : {'all', 'root', 'none'}, default='all'
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
Whether to show informative labels for impurity, etc.
Options include 'all' to show at every node, 'root' to show only at
the top root node, or 'none' to not show at any node.
filled : bool, default=False
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
When set to ``True``, paint nodes to indicate majority class for
classification, extremity of values for regression, or purity of node
for multi-output.
leaves_parallel : bool, default=False
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
When set to ``True``, draw all leaf nodes at the bottom of the tree.
impurity : bool, default=True
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
When set to ``True``, show the impurity at each node.
node_ids : bool, default=False
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
When set to ``True``, show the ID number on each node.
proportion : bool, default=False
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
When set to ``True``, change the display of 'values' and/or 'samples'
to be proportions and percentages respectively.
rotate : bool, default=False
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
When set to ``True``, orient tree left to right rather than top-down.
rounded : bool, default=False
When set to ``True``, draw node boxes with rounded corners.
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
special_characters : bool, default=False
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
When set to ``False``, ignore special characters for PostScript
compatibility.
precision : int, default=3
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
Number of digits of precision for floating point in the values of
impurity, threshold and value attributes of each node.
fontname : str, default='helvetica'
Name of font used to render text.
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
Returns
-------
dot_data : str
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
String representation of the input tree in GraphViz dot format.
Only returned if ``out_file`` is None.
.. versionadded:: 0.18
Examples
--------
>>> from sklearn.datasets import load_iris
>>> from sklearn import tree
>>> clf = tree.DecisionTreeClassifier()
>>> iris = load_iris()
>>> clf = clf.fit(iris.data, iris.target)
>>> tree.export_graphviz(clf)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
'digraph Tree {...
"""
check_is_fitted(decision_tree)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
own_file = False
return_string = False
try:
if isinstance(out_file, str):
out_file = open(out_file, "w", encoding="utf-8")
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
own_file = True
if out_file is None:
return_string = True
out_file = StringIO()
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
exporter = _DOTTreeExporter(
out_file=out_file,
max_depth=max_depth,
feature_names=feature_names,
class_names=class_names,
label=label,
filled=filled,
leaves_parallel=leaves_parallel,
impurity=impurity,
node_ids=node_ids,
proportion=proportion,
rotate=rotate,
rounded=rounded,
special_characters=special_characters,
precision=precision,
fontname=fontname,
)
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
exporter.export(decision_tree)
2016-09-13 08:11:34 +08:00
if return_string:
[MRG] Matplotlib tree plotting (#9251) * add reingold tillford tree layout algorithm * add first silly implementation of matplotlib based plotting for trees * object oriented design for export_graphviz so it can be extended * add class for mlp export * add colors * separately scale x and y, add arrowheads, fix strings * implement max_depth * don't use alpha for coloring because it makes boxes transparent * remove unused variables * vertical center of boxes * fix/simplify newline trimming * somewhere in the middle of stuff trying to get rid of scalex, scaley * remove "find_longest_child" for now, fix tests * make scalex and scaley internal, and ax local. render everything once to get the bbox sizes, then again to actually plot it with known extents. * add some margin to the max bbox width * add _BaseTreeExporter baseclass * add docstring to plot_tree * use data coordinates so we can put the plot in a subplot, remove some hacks. * remove scalex, scaley, add automatic font size * use rendered stuff for setting limits (well nearly there) * import plot_tree into tree module * set limits before font size adjustment? * add tree plotting via matplotlib to iris example and to docs * pep8 fix * skip doctest on plot_tree because matplotlib is not installed on all CI machines * redo everything in axis pixel coordinates re-introduce scalex, scaley add max_extents to tree to get tree size before plotting * fix max-depth parent node positioning and don't consider deep nodes in layouting * consider height in fontsize computation in case someone gave us a very flat figure * fix error when max_depth is None * add docstring for tree plotting fontsize * starting on jnothman's review * renaming fixes * whatsnew for tree plotting * clear axes prior to doing anything. * fix doctests * skip matplotlib doctest * trying to debug circle failure * trying to show full traceback * more print debugging * remove debugging crud * hack around matplotlib <1.5 issues * copy bbox args because old matplotlib is weird. * pep8 fixes * add explicit boxstyle * more pep8 * even more pep8 * add comment about matplotlib version requirement * remove redundant file * add whatsnew entry that the merge lost * fix merge issue * more merge issues * whitespace ... * remove doctest skip to see what's happening * added some simple invariance tests buchheim function * refactor ___init__ into superclass * added some tests of plot_tree * put skip back in, fix typo, fix versionadded number * remove unused parameters special_characters and parallel_leaves from mpl plotting * rename tests to test_reingold_tilford * added license header from pymag-trees repo * remove duplicate test file.
2018-10-12 03:42:02 +08:00
return exporter.out_file.getvalue()
finally:
if own_file:
out_file.close()
def _compute_depth(tree, node):
"""
Returns the depth of the subtree rooted in node.
"""
def compute_depth_(
current_node, current_depth, children_left, children_right, depths
):
depths += [current_depth]
left = children_left[current_node]
right = children_right[current_node]
if left != -1 and right != -1:
compute_depth_(
left, current_depth + 1, children_left, children_right, depths
)
compute_depth_(
right, current_depth + 1, children_left, children_right, depths
)
depths = []
compute_depth_(node, 1, tree.children_left, tree.children_right, depths)
return max(depths)
def export_text(
decision_tree,
*,
feature_names=None,
max_depth=10,
spacing=3,
decimals=2,
show_weights=False,
):
"""Build a text report showing the rules of a decision tree.
Note that backwards compatibility may not be supported.
Parameters
----------
decision_tree : object
The decision tree estimator to be exported.
It can be an instance of
DecisionTreeClassifier or DecisionTreeRegressor.
feature_names : list of str, default=None
A list of length n_features containing the feature names.
If None generic names will be used ("feature_0", "feature_1", ...).
max_depth : int, default=10
Only the first max_depth levels of the tree are exported.
Truncated branches will be marked with "...".
spacing : int, default=3
Number of spaces between edges. The higher it is, the wider the result.
decimals : int, default=2
Number of decimal digits to display.
show_weights : bool, default=False
If true the classification weights will be exported on each leaf.
The classification weights are the number of samples each class.
Returns
-------
report : str
Text summary of all the rules in the decision tree.
Examples
--------
>>> from sklearn.datasets import load_iris
>>> from sklearn.tree import DecisionTreeClassifier
>>> from sklearn.tree import export_text
>>> iris = load_iris()
>>> X = iris['data']
>>> y = iris['target']
>>> decision_tree = DecisionTreeClassifier(random_state=0, max_depth=2)
>>> decision_tree = decision_tree.fit(X, y)
>>> r = export_text(decision_tree, feature_names=iris['feature_names'])
>>> print(r)
|--- petal width (cm) <= 0.80
| |--- class: 0
|--- petal width (cm) > 0.80
| |--- petal width (cm) <= 1.75
| | |--- class: 1
| |--- petal width (cm) > 1.75
| | |--- class: 2
"""
check_is_fitted(decision_tree)
tree_ = decision_tree.tree_
if is_classifier(decision_tree):
class_names = decision_tree.classes_
right_child_fmt = "{} {} <= {}\n"
left_child_fmt = "{} {} > {}\n"
truncation_fmt = "{} {}\n"
if max_depth < 0:
raise ValueError("max_depth bust be >= 0, given %d" % max_depth)
if feature_names is not None and len(feature_names) != tree_.n_features:
raise ValueError(
"feature_names must contain %d elements, got %d"
% (tree_.n_features, len(feature_names))
)
if spacing <= 0:
raise ValueError("spacing must be > 0, given %d" % spacing)
if decimals < 0:
raise ValueError("decimals must be >= 0, given %d" % decimals)
if isinstance(decision_tree, DecisionTreeClassifier):
value_fmt = "{}{} weights: {}\n"
if not show_weights:
value_fmt = "{}{}{}\n"
else:
value_fmt = "{}{} value: {}\n"
if feature_names:
feature_names_ = [
feature_names[i] if i != _tree.TREE_UNDEFINED else None
for i in tree_.feature
]
else:
feature_names_ = ["feature_{}".format(i) for i in tree_.feature]
export_text.report = ""
def _add_leaf(value, class_name, indent):
val = ""
is_classification = isinstance(decision_tree, DecisionTreeClassifier)
if show_weights or not is_classification:
val = ["{1:.{0}f}, ".format(decimals, v) for v in value]
val = "[" + "".join(val)[:-2] + "]"
if is_classification:
val += " class: " + str(class_name)
export_text.report += value_fmt.format(indent, "", val)
def print_tree_recurse(node, depth):
indent = ("|" + (" " * spacing)) * depth
indent = indent[:-spacing] + "-" * spacing
value = None
if tree_.n_outputs == 1:
value = tree_.value[node][0]
else:
value = tree_.value[node].T[0]
class_name = np.argmax(value)
if tree_.n_classes[0] != 1 and tree_.n_outputs == 1:
class_name = class_names[class_name]
if depth <= max_depth + 1:
info_fmt = ""
info_fmt_left = info_fmt
info_fmt_right = info_fmt
if tree_.feature[node] != _tree.TREE_UNDEFINED:
name = feature_names_[node]
threshold = tree_.threshold[node]
threshold = "{1:.{0}f}".format(decimals, threshold)
export_text.report += right_child_fmt.format(indent, name, threshold)
export_text.report += info_fmt_left
print_tree_recurse(tree_.children_left[node], depth + 1)
export_text.report += left_child_fmt.format(indent, name, threshold)
export_text.report += info_fmt_right
print_tree_recurse(tree_.children_right[node], depth + 1)
else: # leaf
_add_leaf(value, class_name, indent)
else:
subtree_depth = _compute_depth(tree_, node)
if subtree_depth == 1:
_add_leaf(value, class_name, indent)
else:
trunc_report = "truncated branch of depth %d" % subtree_depth
export_text.report += truncation_fmt.format(indent, trunc_report)
print_tree_recurse(0, 1)
return export_text.report