scikit-learn/doc/tutorial/statistical_inference/settings.rst

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Statistical learning: the setting and the estimator object in scikit-learn
==========================================================================
Datasets
=========
Scikit-learn deals with learning information from one or more
datasets that are represented as 2D arrays. They can be understood as a
list of multi-dimensional observations. We say that the first axis of
these arrays is the **samples** axis, while the second is the
**features** axis.
.. topic:: A simple example shipped with scikit-learn: iris dataset
::
>>> from sklearn import datasets
>>> iris = datasets.load_iris()
>>> data = iris.data
>>> data.shape
(150, 4)
It is made of 150 observations of irises, each described by 4
features: their sepal and petal length and width, as detailed in
``iris.DESCR``.
When the data is not initially in the ``(n_samples, n_features)`` shape, it
needs to be preprocessed in order to be used by scikit-learn.
[MRG+1] Fix: Replace pylab with matplotlib.pyplot #6754 (#6762) * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 22 occurrences of pylab replaced with matplotlib.pyplot - bench_glm.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 21 remaining occurrences of pylab replaced with matplotlib.pyplot - bench_glmnet.py now free of pylab references - code does not execute for extraneous reason: ImportError: No module named glmnet.elastic_net * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 19 occurrences of pylab replaced with matplotlib.pyplot - bench_lasso.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 18 occurrences of pylab replaced with matplotlib.pyplot - bench_plot_neighbors.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 17 occurrences of pylab replaced with matplotlib.pyplot - bench_plot_omp_lars.py now free of pylab references - code does not execute for extraneous reasons: - File "bench_plot_omp_lars.py", line 111, in <module> - ax = fig.add_subplot(1, 2, i) - ValueError: num must be 1 <= num <= 2, not 0 - line 111 should probably be ax = fig.add_subplot(1, 2, i+1) * Fix: Replace pylab with matplotlib.pyplot #6754 - bench_plot_parallel_pairwise.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - bench_plot_ward.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - bench_sgd_regression.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - bench_tree.py now free of pylab references - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_glm.py clean * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_glm.py clean of pl - code does not execute for extraneous reasons * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_lasso.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_plot_neighbors.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_plot_omp_lars.py clean of pl - code does not execute for extraneous reasons * fix: Fix bug that prevented graphs from displaying * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_plot_parallel_pairwise.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_plot_ward.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_sgd_regression.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_tree.py clean of pl - code executes properly * docs: removed pylab references from comments * docs: removed all pylab references - replaced with matplotlib.pyplot - pl --> plt * docs: removed pylab references from comments - replaced with matplotlib.pyplot - pl --> plt * docs: removed all pylab references - replaced with matplotlib.pyplot - pl --> plt * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - mlcomp_sparse_document_classification.py clean of pl * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - plot_gpr_noisy_targets.py clean of pl - code does not execute for extraneous reasons - File "examples/gaussian_process/plot_gpr_noisy_targets.py", line 31, in <module> - from sklearn.gaussian_process import GaussianProcessRegressor - ImportError: cannot import name GaussianProcessRegressor * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - plot_gpc_isoprobability.py clean of pl - code does not execute for extraneous reasons - File "examples/gaussian_process/plot_gpc_isoprobability.py", line 24, in <module> - from sklearn.gaussian_process import GaussianProcessClassifier - ImportError: cannot import name GaussianProcessClassifier * docs: removed all pylab references - replaced with matplotlib.pyplot - pl --> plt * docs: removed all pylab references - replaced with matplotlib.pyplot * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - plot_sparse_coding.py clean of pl - code executes properly * docs: removed all pylab references - replaced with matplotlib.pyplot * docs: removed all pylab references - replaced with matplotlib.pyplot * style: Indent properly * style: indent properly * style: Indent properly * docs: Add missing .pyplot * docs: Fix typo * style: Indent properly
2016-05-10 17:34:33 +08:00
.. topic:: An example of reshaping data would be the digits dataset
The digits dataset is made of 1797 8x8 images of hand-written
digits ::
>>> digits = datasets.load_digits()
>>> digits.images.shape
(1797, 8, 8)
[MRG+1] Fix: Replace pylab with matplotlib.pyplot #6754 (#6762) * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 22 occurrences of pylab replaced with matplotlib.pyplot - bench_glm.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 21 remaining occurrences of pylab replaced with matplotlib.pyplot - bench_glmnet.py now free of pylab references - code does not execute for extraneous reason: ImportError: No module named glmnet.elastic_net * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 19 occurrences of pylab replaced with matplotlib.pyplot - bench_lasso.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 18 occurrences of pylab replaced with matplotlib.pyplot - bench_plot_neighbors.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - one instance of 17 occurrences of pylab replaced with matplotlib.pyplot - bench_plot_omp_lars.py now free of pylab references - code does not execute for extraneous reasons: - File "bench_plot_omp_lars.py", line 111, in <module> - ax = fig.add_subplot(1, 2, i) - ValueError: num must be 1 <= num <= 2, not 0 - line 111 should probably be ax = fig.add_subplot(1, 2, i+1) * Fix: Replace pylab with matplotlib.pyplot #6754 - bench_plot_parallel_pairwise.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - bench_plot_ward.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - bench_sgd_regression.py now free of pylab references - code executes properly * Fix: Replace pylab with matplotlib.pyplot #6754 - bench_tree.py now free of pylab references - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_glm.py clean * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_glm.py clean of pl - code does not execute for extraneous reasons * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_lasso.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_plot_neighbors.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_plot_omp_lars.py clean of pl - code does not execute for extraneous reasons * fix: Fix bug that prevented graphs from displaying * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_plot_parallel_pairwise.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_plot_ward.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_sgd_regression.py clean of pl - code executes properly * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - bench_tree.py clean of pl - code executes properly * docs: removed pylab references from comments * docs: removed all pylab references - replaced with matplotlib.pyplot - pl --> plt * docs: removed pylab references from comments - replaced with matplotlib.pyplot - pl --> plt * docs: removed all pylab references - replaced with matplotlib.pyplot - pl --> plt * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - mlcomp_sparse_document_classification.py clean of pl * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - plot_gpr_noisy_targets.py clean of pl - code does not execute for extraneous reasons - File "examples/gaussian_process/plot_gpr_noisy_targets.py", line 31, in <module> - from sklearn.gaussian_process import GaussianProcessRegressor - ImportError: cannot import name GaussianProcessRegressor * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - plot_gpc_isoprobability.py clean of pl - code does not execute for extraneous reasons - File "examples/gaussian_process/plot_gpc_isoprobability.py", line 24, in <module> - from sklearn.gaussian_process import GaussianProcessClassifier - ImportError: cannot import name GaussianProcessClassifier * docs: removed all pylab references - replaced with matplotlib.pyplot - pl --> plt * docs: removed all pylab references - replaced with matplotlib.pyplot * refactor: Replace pl with plt - replace instances of pl (as on import pylab as pl) with plt (as in import matplotlib.pyplot as plt) - plot_sparse_coding.py clean of pl - code executes properly * docs: removed all pylab references - replaced with matplotlib.pyplot * docs: removed all pylab references - replaced with matplotlib.pyplot * style: Indent properly * style: indent properly * style: Indent properly * docs: Add missing .pyplot * docs: Fix typo * style: Indent properly
2016-05-10 17:34:33 +08:00
>>> import matplotlib.pyplot as plt #doctest: +SKIP
>>> plt.imshow(digits.images[-1],
... cmap=plt.cm.gray_r) #doctest: +SKIP
<matplotlib.image.AxesImage object at ...>
.. image:: /auto_examples/datasets/images/sphx_glr_plot_digits_last_image_001.png
:target: ../../auto_examples/datasets/plot_digits_last_image.html
:align: center
To use this dataset with scikit-learn, we transform each 8x8 image into a
feature vector of length 64 ::
>>> data = digits.images.reshape(
... (digits.images.shape[0], -1)
... )
Estimators objects
===================
.. Some code to make the doctests run
>>> from sklearn.base import BaseEstimator
>>> class Estimator(BaseEstimator):
... def __init__(self, param1=0, param2=0):
... self.param1 = param1
... self.param2 = param2
... def fit(self, data):
... pass
>>> estimator = Estimator()
**Fitting data**: the main API implemented by scikit-learn is that of the
`estimator`. An estimator is any object that learns from data;
it may be a classification, regression or clustering algorithm or
a *transformer* that extracts/filters useful features from raw data.
All estimator objects expose a ``fit`` method that takes a dataset
(usually a 2-d array):
>>> estimator.fit(data)
**Estimator parameters**: All the parameters of an estimator can be set
when it is instantiated or by modifying the corresponding attribute::
>>> estimator = Estimator(param1=1, param2=2)
>>> estimator.param1
1
**Estimated parameters**: When data is fitted with an estimator,
parameters are estimated from the data at hand. All the estimated
parameters are attributes of the estimator object ending by an
underscore::
>>> estimator.estimated_param_ #doctest: +SKIP